Standardizing biomass reactions and ensuring complete mass balance in genome-scale metabolic models SHJ Chan, J Cai, L Wang, MN Simons-Senftle, CD Maranas Bioinformatics 33 (22), 3603-3609, 2017 | 105 | 2017 |
A new genome-scale metabolic model of Corynebacterium glutamicum and its application Y Zhang, J Cai, X Shang, B Wang, S Liu, X Chai, T Tan, Y Zhang, T Wen Biotechnology for biofuels 10, 1-16, 2017 | 86 | 2017 |
Integrating thermodynamic and enzymatic constraints into genome-scale metabolic models X Yang, Z Mao, X Zhao, R Wang, P Zhang, J Cai, C Xue, H Ma Metabolic Engineering 67, 133-144, 2021 | 31 | 2021 |
Predicting Nash equilibria for microbial metabolic interactions J Cai, T Tan, SHJ Chan Bioinformatics 36 (24), 5649-5655, 2020 | 24 | 2020 |
Construction and Analysis of an Enzyme-Constrained Metabolic Model of Corynebacterium glutamicum J Niu, Z Mao, Y Mao, K Wu, Z Shi, Q Yuan, J Cai, H Ma Biomolecules 12 (10), 1499, 2022 | 14 | 2022 |
ecBSU1: A Genome-Scale Enzyme-Constrained Model of Bacillus subtilis Based on the ECMpy Workflow K Wu, Z Mao, Y Mao, J Niu, J Cai, Q Yuan, L Yun, X Liao, Z Wang, H Ma Microorganisms 11 (1), 178, 2023 | 13 | 2023 |
A novel DMAPP-responding genetic circuit sensor for high-throughput screening and evolving isoprene synthase CL Liu, JY Cai, HR Bi, TW Tan Applied microbiology and biotechnology 102, 1381-1391, 2018 | 10 | 2018 |
Reconstruction of a Genome-Scale Metabolic Network for Shewanella oneidensis MR-1 and Analysis of its Metabolic Potential for Bioelectrochemical Systems J Luo, Q Yuan, Y Mao, F Wei, J Zhao, W Yu, S Kong, Y Guo, J Cai, X Liao, ... Frontiers in Bioengineering and Biotechnology 10, 913077, 2022 | 9 | 2022 |
Bridging traditional evolutionary game theory and metabolic models for predicting Nash equilibrium of microbial metabolic interactions J Cai, T Tan, SHJ Chan bioRxiv, 623173, 2019 | 9 | 2019 |
Oleate esters production by bridging Clostridium acetobutylicum fermentation and Candida sp. 99–125 full-cell catalysis based on gas stripping-pervaporation unit C Chen, H Chen, G Sun, J Cai, Y Zhen, D Cai, P Qin, B Chen, T Tan Process Biochemistry 71, 12-17, 2018 | 9 | 2018 |
Simultaneous acetone–butanol–ethanol fermentation, gas stripping, and full-cell-catalyzed esterification for effective production of butyl oleate C Chen, D Cai, H Chen, J Cai, G Sun, P Qin, B Chen, Y Zhen, T Tan Bioprocess and biosystems engineering 41, 1329-1336, 2018 | 8 | 2018 |
Development of metabolic models with multiple constraints: a review X Yang, P Zhang, Z Mao, X Zhao, R Wang, J Cai, Z Wang, H Ma Sheng wu Gong Cheng xue bao= Chinese Journal of Biotechnology 38 (2), 531-545, 2022 | 2 | 2022 |
Designing gene manipulation schedules for high throughput parallel construction of objective strains J Cai, X Liao, Y Mao, R Wang, H Li, H Ma Biotechnology Journal 18 (9), 2200578, 2023 | 1 | 2023 |
Construction and analysis of an enzyme-constrained metabolic model of Corynebacterium glutamicum. Biomolecules. 2022; 12: 1499 J Niu, Z Mao, Y Mao, K Wu, Z Shi, Q Yuan, J Cai, H Ma s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2022 | 1 | 2022 |
Genome sequencing and metabolic network reconstruction of a novel sulfur-oxidizing bacterium Acidithiobacillus Ameehan P Wu, Q Yuan, T Cheng, Y Han, W Zhao, X Liao, L Wang, J Cai, Q He, ... Frontiers in Microbiology 14, 1277847, 2023 | | 2023 |
Elucidating the impact of in vitro cultivation on Nicotiana tabacum metabolism through combined in silico modeling and multiomics analysis J Yu, X Wang, Q Yuan, J Shi, J Cai, Z Li, H Ma Frontiers in Plant Science 14, 1281348, 2023 | | 2023 |
Predicting Nash Equilibria and Limiting Cross-Feedings for Microbial Metabolic Interactions J Cai, T Tan, SHJ Chan 2020 Virtual AIChE Annual Meeting, 2020 | | 2020 |