| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1352 | 2020 |
| MitoFates: improved prediction of mitochondrial targeting sequences and their cleavage sites*[S] Y Fukasawa, J Tsuji, SC Fu, K Tomii, P Horton, K Imai Molecular & Cellular Proteomics 14 (4), 1113-1126, 2015 | 554 | 2015 |
| The psychencode project S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ... Nature neuroscience 18 (12), 1707-1712, 2015 | 353 | 2015 |
| Durvalumab plus tremelimumab alone or in combination with low-dose or hypofractionated radiotherapy in metastatic non-small-cell lung cancer refractory to previous PD (L)-1 … JD Schoenfeld, A Giobbie-Hurder, S Ranasinghe, KZ Kao, A Lako, J Tsuji, ... The Lancet Oncology 23 (2), 279-291, 2022 | 159 | 2022 |
| Mammalian NUMT insertion is non-random J Tsuji, MC Frith, K Tomii, P Horton Nucleic acids research 40 (18), 9073-9088, 2012 | 116 | 2012 |
| Donor clonal hematopoiesis and recipient outcomes after transplantation CJ Gibson, HT Kim, L Zhao, HM Murdock, B Hambley, A Ogata, ... Journal of Clinical Oncology 40 (2), 189-201, 2022 | 112 | 2022 |
| Perspectives on ENCODE MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ... Nature 583 (7818), 693-698, 2020 | 106 | 2020 |
| Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions Y Saito, J Tsuji, T Mituyama Nucleic acids research 42 (6), e45-e45, 2014 | 77 | 2014 |
| The role of H3K4me3 in transcriptional regulation is altered in Huntington’s disease X Dong, J Tsuji, A Labadorf, P Roussos, JF Chen, RH Myers, S Akbarian, ... PloS one 10 (12), e0144398, 2015 | 63 | 2015 |
| Annotation of chromatin states in 66 complete mouse epigenomes during development A van der Velde, K Fan, J Tsuji, JE Moore, MJ Purcaro, HE Pratt, Z Weng Communications Biology 4 (1), 239, 2021 | 54 | 2021 |
| Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data J Tsuji, Z Weng Briefings in bioinformatics 17 (6), 938-952, 2016 | 35 | 2016 |
| Phase II clinical trial of everolimus in a pan-cancer cohort of patients with mTOR pathway alterations E Adib, K Klonowska, K Giannikou, KT Do, S Pruitt-Thompson, K Bhushan, ... Clinical Cancer Research 27 (14), 3845-3853, 2021 | 33 | 2021 |
| Perspectives on ENCODE F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama Nature 583 (7818), 693-699, 2020 | 27 | 2020 |
| DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing Data J Tsuji, Z Weng PloS one 11 (10), e0164228, 2016 | 26 | 2016 |
| Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods W Zhang, X Zhu, Y Fu, J Tsuji, Z Weng BMC bioinformatics 18, 1-11, 2017 | 25 | 2017 |
| Circulating tumor DNA is prognostic in intermediate-risk rhabdomyosarcoma: a report from the Children's Oncology Group S Abbou, K Klega, J Tsuji, M Tanhaemami, D Hall, DA Barkauskas, ... Journal of Clinical Oncology 41 (13), 2382-2393, 2023 | 16 | 2023 |
| Clinical Efficacy and Whole-Exome Sequencing of Liquid Biopsies in a Phase IB/II Study of Bazedoxifene and Palbociclib in Advanced Hormone Receptor–Positive Breast Cancer J Tsuji, T Li, A Grinshpun, T Coorens, D Russo, L Anderson, R Rees, ... Clinical Cancer Research 28 (23), 5066-5078, 2022 | 14 | 2022 |
| Integrated miRNA-/mRNA-Seq of the habenulo-interpeduncular circuit during acute nicotine withdrawal AP Casserly, J Tsuji, R Zhao-Shea, CB Smith, S Molas, AR Tapper, ... Scientific Reports 10 (1), 813, 2020 | 11 | 2020 |
| High-resolution analysis of differential gene expression during skeletal muscle atrophy and programmed cell death J Tsuji, T Thomson, E Chan, CK Brown, J Oppenheimer, C Bigelow, ... Physiological Genomics 52 (10), 492-511, 2020 | 8 | 2020 |
| Somatic piRNAs and transposons are differentially expressed coincident with skeletal muscle atrophy and programmed cell death J Tsuji, T Thomson, C Brown, S Ghosh, WE Theurkauf, Z Weng, ... Frontiers in Genetics 12, 775369, 2021 | 7 | 2021 |
