| Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution B Li, W Zhang, C Guo, H Xu, L Li, M Fang, Y Hu, X Zhang, X Yao, M Tang, ... Nature Methods, 1-9, 2022 | 194 | 2022 |
| Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm C Guo, B Li, H Ma, X Wang, P Cai, Q Yu, L Zhu, L Jin, C Jiang, J Fang, ... Nature communications 11 (1), 1-11, 2020 | 194 | 2020 |
| Single-cell profiling of the human decidual immune microenvironment in patients with recurrent pregnancy loss C Guo, P Cai, L Jin, Q Sha, Q Yu, W Zhang, C Jiang, Q Liu, D Zong, K Li, ... Cell discovery 7 (1), 1-15, 2021 | 98 | 2021 |
| A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis P Cai, ABC Otten, B Cheng, MA Ishii, W Zhang, B Huang, K Qu, BK Sun Genome research 30 (1), 22-34, 2020 | 75 | 2020 |
| Tocilizumab treatment in severe COVID-19 patients attenuates the inflammatory storm incited by monocyte centric immune interactions revealed by single-cell analysis C Guo, B Li, H Ma, X Wang, P Cai, Q Yu, L Zhu, L Jin, C Jiang, J Fang, ... | 61 | 2020 |
| Chromatin accessibility analysis reveals regulatory dynamics of developing human retina and hiPSC-derived retinal organoids H Xie, W Zhang, M Zhang, T Akhtar, Y Li, W Yi, X Sun, Z Zuo, M Wei, ... Science advances 6 (6), eaay5247, 2020 | 58 | 2020 |
| Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis Q Liu, LC Zaba, AT Satpathy, M Longmire, W Zhang, K Li, J Granja, C Guo, ... Nature communications 11 (1), 1-12, 2020 | 30 | 2020 |
| ATAC-pipe: general analysis of genome-wide chromatin accessibility Z Zuo, Y Jin, W Zhang, Y Lu, B Li, K Qu Briefings in Bioinformatics 20 (5), 1934-1943, 2019 | 25 | 2019 |
| WEDGE: imputation of gene expression values from single-cell RNA-seq datasets using biased matrix decomposition Y Hu, B Li, W Zhang, N Liu, P Cai, F Chen, K Qu Briefings in Bioinformatics 22 (5), bbab085, 2021 | 24 | 2021 |
| APEC: an accesson-based method for single-cell chromatin accessibility analysis B Li, Y Li, K Li, L Zhu, Q Yu, P Cai, J Fang, W Zhang, P Du, C Jiang, J Lin, ... Genome biology 21 (1), 1-27, 2020 | 11 | 2020 |
| Chromatin accessibility analysis identifies the transcription factor ETV5 as a suppressor of adipose tissue macrophage activation in obesity RD Hu, W Zhang, L Li, ZQ Zuo, M Ma, JF Ma, TT Yin, CY Gao, SH Yang, ... Cell death & disease 12 (11), 1-11, 2021 | 8 | 2021 |
| Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis D Zong, B Huang, Y Li, Y Lu, N Xiang, C Guo, Q Liu, Q Sha, P Du, Q Yu, ... BMC biology 19 (1), 1-15, 2021 | 5 | 2021 |
| APEC: An accesson-based method for single-cell chromatin accessibility analysis B Li, Y Li, K Li, L Zhu, Q Yu, P Cai, J Fang, W Zhang, P Du, C Jiang, K Qu bioRxiv, 646331, 2019 | | 2019 |
