Benchmark and integration of resources for the estimation of human transcription factor activities L Garcia-Alonso, CH Holland, MM Ibrahim, D Turei, J Saez-Rodriguez Genome research 29 (8), 1363-1375, 2019 | 677 | 2019 |
Decoding myofibroblast origins in human kidney fibrosis C Kuppe, MM Ibrahim, J Kranz, X Zhang, S Ziegler, J Perales-Patón, ... Nature 589 (7841), 281-286, 2021 | 455 | 2021 |
Human Promoters Are Intrinsically Directional SHC Duttke, SA Lacadie, MM Ibrahim, CK Glass, DL Corcoran, C Benner, ... Molecular cell 57 (4), 674-684, 2015 | 157 | 2015 |
A multi-step transcriptional and chromatin state cascade underlies motor neuron programming from embryonic stem cells S Velasco, MM Ibrahim, A Kakumanu, G Garipler, B Aydin, MA Al-Sayegh, ... Cell Stem Cell 20 (2), 205-217. e8, 2017 | 103 | 2017 |
JAMM: a peak finder for joint analysis of NGS replicates MM Ibrahim, SA Lacadie, U Ohler Bioinformatics 31 (1), 48-55, 2015 | 83 | 2015 |
Expression of recombinant staphylokinase in the methylotrophic yeast Hansenula polymorpha M Moussa, M Ibrahim, M El Ghazaly, J Rohde, S Gnoth, A Anton, F Kensy, ... BMC biotechnology 12, 1-13, 2012 | 41 | 2012 |
Determinants of promoter and enhancer transcription directionality in metazoans MM Ibrahim, A Karabacak, A Glahs, E Kolundzic, A Hirsekorn, A Carda, ... Nature communications 9 (1), 4472, 2018 | 33 | 2018 |
Divergent transcription and epigenetic directionality of human promoters SA Lacadie, MM Ibrahim, SA Gokhale, U Ohler The FEBS journal 283 (23), 4214-4222, 2016 | 29 | 2016 |
Perspectives on unidirectional versus divergent transcription SHC Duttke, SA Lacadie, MM Ibrahim, CK Glass, DL Corcoran, C Benner, ... Molecular cell 60 (3), 348-349, 2015 | 24 | 2015 |
Parallel single-cell and bulk transcriptome analyses reveal key features of the gastric tumor microenvironment B Kang, J Camps, B Fan, H Jiang, MM Ibrahim, X Hu, S Qin, D Kirchhoff, ... Genome biology 23 (1), 265, 2022 | 22 | 2022 |
genesorteR: Feature Ranking in Clustered Single Cell Data MM Ibrahim, R Kramann bioRxiv, 676379, 2019 | 21 | 2019 |
Meta-Analysis of Human Cancer Single-Cell RNA-Seq Datasets Using the IMMUcan Database J Camps, F Noël, R Liechti, L Massenet-Regad, S Rigade, L Götz, ... Cancer Research 83 (3), 363-373, 2023 | 18 | 2023 |
Fibrosis and immune cell infiltration are separate events regulated by cell-specific receptor notch3 expression S Brandt, TM Ballhause, A Bernhardt, A Becker, D Salaru, HM Le-Deffge, ... Journal of the American Society of Nephrology 31 (11), 2589-2608, 2020 | 18 | 2020 |
A functional landscape of CKD entities from public transcriptomic data F Tajti, C Kuppe, A Antoranz, MM Ibrahim, H Kim, F Ceccarelli, ... Kidney international reports 5 (2), 211-224, 2020 | 17 | 2020 |
Cellenium—a scalable and interactive visual analytics app for exploring multimodal single-cell data C Jahn, M Ibrahim, J Busch, Q Lin, H Manchanda, H Mohr, D Plischke, ... Bioinformatics 39 (6), btad349, 2023 | | 2023 |