| Enrichr-KG: bridging enrichment analysis across multiple libraries JE Evangelista, Z Xie, GB Marino, N Nguyen, DJB Clarke, A Ma’ayan Nucleic acids research 51 (W1), W168-W179, 2023 | 30 | 2023 |
| Anatomy of the human osseous spiral lamina and cochlear partition bridge: relevance for cochlear partition motion S Raufer, C Idoff, A Zosuls, G Marino, N Blanke, IJ Bigio, JT O’Malley, ... Journal of the Association for Research in Otolaryngology 21, 171-182, 2020 | 7 | 2020 |
| lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs GB Marino, ML Wojciechowicz, DJB Clarke, MV Kuleshov, Z Xie, M Jeon, ... Database 2023, baad009, 2023 | 6 | 2023 |
| Pan-cancer proteogenomics characterization of tumor immunity F Petralia, W Ma, TM Yaron, FP Caruso, N Tignor, JM Wang, ... Cell 187 (5), 1255-1277. e27, 2024 | 5 | 2024 |
| Toxicology knowledge graph for structural birth defects JE Evangelista, DJB Clarke, Z Xie, GB Marino, V Utti, SL Jenkins, ... Communications Medicine 3 (1), 98, 2023 | 3* | 2023 |
| GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery GB Marino, M Ngai, DJB Clarke, RH Fleishman, EZ Deng, Z Xie, N Ahmed, ... Nucleic Acids Research 51 (W1), W213-W224, 2023 | 2 | 2023 |
| Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells EZ Deng, RH Fleishman, Z Xie, GB Marino, DJB Clarke, A Ma'ayan Aging Cell 22 (6), e13809, 2023 | 2 | 2023 |
| Rummagene: massive mining of gene sets from supporting materials of biomedical research publications DJB Clarke, GB Marino, EZ Deng, Z Xie, JE Evangelista, A Ma’ayan Communications Biology 7 (1), 482, 2024 | 1* | 2024 |
| Regulatory Elements in SEM1–DLX5–DLX6 (7q21. 3) Locus Contribute to Genetic Control of Coronal Nonsyndromic Craniosynostosis and Bone Density-Related Traits P Nicoletti, S Zafer, L Matok, I Irron, M Patrick, R Haklai, JE Evangelista, ... Genetics in Medicine Open, 101851, 2024 | | 2024 |
| RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO GB Marino, DJB Clarke, EZ Deng, A Ma’ayan bioRxiv, 2024 | | 2024 |
| Personalized cell surface target identification from pan-cancer RNA-seq and proteomics profiling of tumors GB Marino, EZ Deng, DJB Clarke, W Ma, P Wang, AC Resnick, A Ma'ayan Cancer Research 84 (6_Supplement), 4897-4897, 2024 | | 2024 |
| Optimizing pan-cancer driver pathway analysis from patient transcriptomics and phosphoproteomics EZ Deng, GB Marino, DJ Clarke, W Ma, P Wang, A Ma'ayan Cancer Research 84 (6_Supplement), 7346-7346, 2024 | | 2024 |
| A proteogenomic study of high-grade glioma among adolescents and young adults N Tignor, MP Koptyra, S Chowdhury, W Ma, JL Rokita, M Gritsenko, ... Cancer Research 84 (6_Supplement), 3955-3955, 2024 | | 2024 |
| Playbook Workflow Builder: Interactive Construction of Bioinformatics Workflows from a Network of Microservices DJB Clarke, JE Evangelista, Z Xie, GB Marino, MR Maurya, S Srinivasan, ... bioRxiv, 2024.06. 08.598037, 2024 | | 2024 |
| D2H2: diabetes data and hypothesis hub GB Marino, N Ahmed, Z Xie, KM Jagodnik, J Han, DJB Clarke, ... Bioinformatics Advances 3 (1), vbad178, 2023 | | 2023 |
