Epigenetic memory of coronavirus infection in innate immune cells and their progenitors JG Cheong, A Ravishankar, S Sharma, CN Parkhurst, SA Grassmann, ... Cell 186 (18), 3882-3902. e24, 2023 | 105 | 2023 |
Transcriptional activation of Jun and Fos members of the AP‐1 complex is a conserved signature of immune aging that contributes to inflammaging EO Karakaslar, N Katiyar, M Hasham, A Youn, S Sharma, C Chung, ... Aging Cell 22 (4), e13792, 2023 | 37 | 2023 |
Machine learning assisted intraoperative assessment of brain tumor margins using HRMAS NMR spectroscopy D Cakmakci, EO Karakaslar, E Ruhland, MP Chenard, F Proust, M Piotto, ... PLoS Computational Biology 16 (11), e1008184, 2020 | 23 | 2020 |
Epigenetic memory of COVID-19 in innate immune cells and their progenitors JG Cheong Weill Medical College of Cornell University, 2023 | 16 | 2023 |
Distinct baseline immune characteristics associated with responses to conjugated and unconjugated pneumococcal polysaccharide vaccines in older adults S Ravichandran, F Erra-Diaz, OE Karakaslar, R Marches, ... Nature immunology 25 (2), 316-329, 2024 | 11 | 2024 |
Mapping AML heterogeneity-multi-cohort transcriptomic analysis identifies novel clusters and divergent ex-vivo drug responses JF Severens, EO Karakaslar, BA van der Reijden, E Sánchez-López, ... Leukemia 38 (4), 751-761, 2024 | 6 | 2024 |
cinaR: A comprehensive R package for the differential analyses and functional interpretation of ATAC-seq data EO Karakaslar, D Ucar BioRxiv, 2021.03. 05.434143, 2021 | 6 | 2021 |
Predicting carbon spectrum in heteronuclear single quantum coherence spectroscopy for online feedback during surgery EO Karakaslar, B Coskun, H Outilaft, IJ Namer, AE Cicek IEEE/ACM transactions on computational biology and bioinformatics 17 (2 …, 2019 | 6 | 2019 |
A transcriptomic based deconvolution framework for assessing differentiation stages and drug responses of AML EO Karakaslar, JF Severens, E Sánchez-López, PA van Veelen, M Zlei, ... npj Precision Oncology 8 (1), 105, 2024 | 1 | 2024 |
Single cell guided deconvolution of bulk transcriptomics recapitulates differentiation stages of acute myeloid leukemia and predicts drug response EO Karakaslar, J Severens, E Sánchez-López, PA van Veelen, M Zlei, ... bioRxiv, 2022.12. 09.519738, 2022 | 1 | 2022 |
Utilizing epigenetic regulators to improve HSC-based lentiviral gene therapy P Tajer, EO Karakaslar, K Canté-Barrett, BAE Naber, SA Vloemans, ... Blood Advances 8 (18), 4936-4947, 2024 | | 2024 |
Resolving inter-and intra-patient heterogeneity in NPM1-mutated AML at single-cell resolution EO Karakaslar, EM Argiro, NE Struckman, RHZ Shirali, JF Severens, ... medRxiv, 2024.12. 10.24317471, 2024 | | 2024 |
Pre-vaccination CD56 dimCD16+ NK cell abundance and T h1/T h17 ratio predict responsiveness to conjugated pneumococcal vaccine in older adults SBS Ravichandran, FE Diaz, OE Karakaslar, R Marches, R Rossi, ... The Journal of Immunology 210 (1_Supplement), 252.03-252.03, 2023 | | 2023 |
Integrated transcriptional analysis reveals gene expression-based AML subtypes with distinct outcomes and drug responses JF Severens, EO Karakaslar, BA van der Reijden, E Sánchez-López, ... medRxiv, 2023.03. 29.23287896, 2023 | | 2023 |
SEXUAL-DIMORPHISM IN HUMAN IMMUNE SYSTEM AGING D Ucar, G Kuchel, J Banchereau, S Ravichandran, O Karakaslar, FE Diaz, ... Innovation in Aging 6 (Supplement_1), 165-166, 2022 | | 2022 |