Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 1568 | 2021 |
Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. bioRxiv, 2020.04. 16.045302 J Damas, GM Hughes, KC Keough, CA Painter, NS Persky, M Corbo, ... | 638* | 2020 |
A comparative genomics multitool for scientific discovery and conservation Nature 587 (7833), 240-245, 2020 | 240 | 2020 |
Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set J Damas, R O'Connor, M Farré, VPE Lenis, HJ Martell, A Mandawala, ... Genome research 27 (5), 875-884, 2017 | 120 | 2017 |
Association of G-quadruplex forming sequences with human mtDNA deletion breakpoints DW Dong, F Pereira, SP Barrett, JE Kolesar, K Cao, J Damas, ... BMC genomics 15, 1-15, 2014 | 109 | 2014 |
Chromosome segregation is biased by kinetochore size D Drpic, AC Almeida, P Aguiar, F Renda, J Damas, HA Lewin, DM Larkin, ... Current Biology 28 (9), 1344-1356. e5, 2018 | 106 | 2018 |
Platypus and echidna genomes reveal mammalian biology and evolution Y Zhou, L Shearwin-Whyatt, J Li, Z Song, T Hayakawa, D Stevens, ... Nature 592 (7856), 756-762, 2021 | 103 | 2021 |
Third Report on Chicken Genes and Chromosomes 2015Prepared by M Schmid, J Smith, DW Burt, BL Aken, PB Antin, AL Archibald, C Ashwell, ... Cytogenetic and genome research 145 (2), 78-179, 2015 | 95 | 2015 |
Evolutionary constraint and innovation across hundreds of placental mammals MJ Christmas, IM Kaplow, DP Genereux, MX Dong, GM Hughes, X Li, ... Science 380 (6643), eabn3943, 2023 | 89 | 2023 |
Mitochondrial DNA rearrangements in health and disease—a comprehensive study J Damas, DC Samuels, J Carneiro, A Amorim, F Pereira Human mutation 35 (1), 1-14, 2014 | 87 | 2014 |
Digital PCR methods improve detection sensitivity and measurement precision of low abundance mtDNA deletions FR Belmonte, JL Martin, K Frescura, J Damas, F Pereira, MA Tarnopolsky, ... Scientific reports 6 (1), 25186, 2016 | 85 | 2016 |
Mitochondrial DNA deletions are associated with non-B DNA conformations J Damas, J Carneiro, J Goncalves, JB Stewart, DC Samuels, A Amorim, ... Nucleic acids research 40 (16), 7606-7621, 2012 | 82 | 2012 |
Novel insights into chromosome evolution in birds, archosaurs, and reptiles M Farre, J Narayan, GT Slavov, J Damas, L Auvil, C Li, ED Jarvis, DW Burt, ... Genome biology and evolution 8 (8), 2442-2451, 2016 | 76 | 2016 |
Chromosome-level assembly reveals extensive rearrangement in saker falcon and budgerigar, but not ostrich, genomes RE O’Connor, M Farré, S Joseph, J Damas, L Kiazim, R Jennings, ... Genome biology 19, 1-15, 2018 | 71 | 2018 |
MitoBreak: the mitochondrial DNA breakpoints database J Damas, J Carneiro, A Amorim, F Pereira Nucleic acids research 42 (D1), D1261-D1268, 2014 | 70 | 2014 |
Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs RE O’Connor, MN Romanov, LG Kiazim, PM Barrett, M Farré, J Damas, ... Nature communications 9 (1), 1883, 2018 | 66 | 2018 |
Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro-and microchromosomes J Damas, J Kim, M Farré, DK Griffin, DM Larkin Genome biology 19, 1-16, 2018 | 60 | 2018 |
A genomic timescale for placental mammal evolution NM Foley, VC Mason, AJ Harris, KR Bredemeyer, J Damas, HA Lewin, ... Science 380 (6643), eabl8189, 2023 | 51 | 2023 |
Integrating gene annotation with orthology inference at scale BM Kirilenko, C Munegowda, E Osipova, D Jebb, V Sharma, M Blumer, ... Science 380 (6643), eabn3107, 2023 | 47 | 2023 |
Evolution of the ancestral mammalian karyotype and syntenic regions J Damas, M Corbo, J Kim, J Turner-Maier, M Farré, DM Larkin, OA Ryder, ... Proceedings of the National Academy of Sciences 119 (40), e2209139119, 2022 | 46 | 2022 |