| In situ transcription profiling of single cells reveals spatial organization of cells in the mouse hippocampus S Shah, E Lubeck, W Zhou, L Cai Neuron 92 (2), 342-357, 2016 | 621 | 2016 |
| Dynamics and spatial genomics of the nascent transcriptome by intron seqFISH S Shah, Y Takei, W Zhou, E Lubeck, J Yun, CHL Eng, N Koulena, ... Cell 174 (2), 363-376. e16, 2018 | 284 | 2018 |
| seqFISH accurately detects transcripts in single cells and reveals robust spatial organization in the hippocampus S Shah, E Lubeck, W Zhou, L Cai Neuron 94 (4), 752-758. e1, 2017 | 129 | 2017 |
| Error correction of multiplex imaging analysis by sequential hybridization L Cai, S Shah, E Lubeck, W Zhou US Patent 10,510,435, 2019 | 91 | 2019 |
| Single-cell analysis reveals regulatory gene expression dynamics leading to lineage commitment in early T cell development W Zhou, MA Yui, BA Williams, J Yun, BJ Wold, L Cai, EV Rothenberg Cell systems 9 (4), 321-337. e9, 2019 | 91 | 2019 |
| Runx1 and Runx3 drive progenitor to T-lineage transcriptome conversion in mouse T cell commitment via dynamic genomic site switching B Shin, H Hosokawa, M Romero-Wolf, W Zhou, K Masuhara, VR Tobin, ... Proceedings of the National Academy of Sciences 118 (4), e2019655118, 2021 | 36 | 2021 |
| Notch2 complements Notch1 to mediate inductive signaling that initiates early T cell development M Romero-Wolf, B Shin, W Zhou, M Koizumi, EV Rothenberg, ... Journal of Cell Biology 219 (10), 2020 | 31 | 2020 |
| Single-cell deletion analyses show control of pro–T cell developmental speed and pathways by Tcf7, Spi1, Gata3, Bcl11a, Erg, and Bcl11b W Zhou, F Gao, M Romero-Wolf, S Jo, EV Rothenberg Science immunology 7 (71), eabm1920, 2022 | 27 | 2022 |
| Multi-scale dynamical modeling of T cell development from an early thymic progenitor state to lineage commitment V Olariu, MA Yui, P Krupinski, W Zhou, J Deichmann, E Andersson, ... Cell reports 34 (2), 2021 | 12 | 2021 |
| Cellular and subcellular context determine outputs from signaling biosensors D Devost, N Audet, C Zhou, H Kobayashi, H Bonin, V Lukashova, ... Methods in cell biology 132, 319-337, 2016 | 8 | 2016 |
| Runx factors launch T cell and innate lymphoid programs via direct and gene network-based mechanisms B Shin, W Zhou, J Wang, F Gao, EV Rothenberg Nature Immunology 24 (9), 1458-1472, 2023 | 7 | 2023 |
| Editorial note to: In situ transcription profiling of single cells reveals spatial organization of cells in the mouse hippocampus S Shah, E Lubeck, W Zhou, L Cai Neuron 94 (4), 745-746, 2017 | 7 | 2017 |
| Building a human thymus: a pointillist view W Zhou, EV Rothenberg Immunity 51 (5), 788-790, 2019 | 4 | 2019 |
| Single-cell perturbation dissects transcription factor control of progression speed and trajectory choice in early T-cell development W Zhou, F Gao, M Romero-Wolf, S Jo, EV Rothenberg BioRxiv, 2021.09. 03.458944, 2021 | 1 | 2021 |
| Tracking GPCR biosynthesis and degradation using a nonradioactive pulse chase methodology R Wargachuk, D Devost, C Zhou, TE Hébert Methods in Cell Biology 132, 217-231, 2016 | 1 | 2016 |
| Author Correction: Runx factors launch T cell and innate lymphoid programs via direct and gene network-based mechanisms B Shin, W Zhou, J Wang, F Gao, EV Rothenberg Nature Immunology 25 (2), 372-372, 2024 | | 2024 |
| 3177–RUNX FACTORS LAUNCH T CELL AND INNATE LYMPHOID CELL PROGRAMS VIA DIRECT BINDING AND GENE NETWORK-BASED MECHANISMS B Shin, W Zhou, J Wang, F Gao, E Rothenberg Experimental Hematology 124, S138, 2023 | | 2023 |
| 1027–RELINQUISHING STEMNESS IN EARLY T CELLS THROUGH GENE REGULATORY NETWORKS AND EPIGENETIC CONTROL E Rothenberg, B Shin, W Zhou, F Gao, T Sidwell Experimental Hematology 111, S28, 2022 | | 2022 |
| Single-Cell Analysis of Normal and Perturbed Early T-Cell Developmental Processes W Zhou California Institute of Technology, 2021 | | 2021 |
| Regulation of genomic activity in T-lymphocyte development by dynamic transcription factor ensembles E Rothenberg, H Hosokawa, M Romero-Wolf, X Wang, W Zhou, ... Experimental Hematology 64, S30-S31, 2018 | | 2018 |
