| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... RNA 23 (5), 655-672, 2017 | 187 | 2017 |
| RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... RNA 21 (6), 1066-1084, 2015 | 184 | 2015 |
| Vfold: a web server for RNA structure and folding thermodynamics prediction X Xu, P Zhao, SJ Chen PloS one 9 (9), e107504, 2014 | 170 | 2014 |
| RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, JM Bujnicki, SJ Chen, ... RNA 26, 982-995, 2020 | 117 | 2020 |
| CRISPR-Cas9 cleavage efficiency correlates strongly with target-sgRNA folding stability: from physical mechanism to off-target assessment X Xu, D Duan, SJ Chen Scientific Reports 7 (1), 143, 2017 | 79 | 2017 |
| Mimicking ribosomal unfolding of RNA pseudoknot in a protein channel X Zhang, X Xu, Z Yang, AJ Burcke, KS Gates, SJ Chen, LQ Gu Journal of the American Chemical Society 137 (50), 15742-15752, 2015 | 51 | 2015 |
| Predicting RNA structure with Vfold C Zhao, X Xu, SJ Chen Methods in Molecular Biology 1654, 3-15, 2017 | 49 | 2017 |
| Improvement of Prediction Performance With Conjoint Molecular Fingerprint in Deep Learning L Xie, L Xu, R Kong, S Chang, X Xu* Frontiers in Pharmacology 11, 606668, 2020 | 44 | 2020 |
| Understanding the kinetic mechanism of RNA single base pair formation X Xu, T Yu, SJ Chen Proceedings of the National Academy of Sciences USA 113 (1), 116-121, 2016 | 44 | 2016 |
| Hierarchical assembly of RNA three-dimensional structures based on loop templates X Xu, SJ Chen The Journal of Physical Chemistry B 122, 5327-5335, 2018 | 39 | 2018 |
| Experimental observation of ordered stress patterns in iron films deposited on silicone oil surfaces QL Ye, XJ Xu, PG Cai, AG Xia, GX Ye Physics Letters A 318 (4), 457-462, 2003 | 36 | 2003 |
| Anomalous hysteresis properties of iron films deposited on liquid surfaces QL Ye, CM Feng, XJ Xu, JS Jin, AG Xia, GX Ye Journal of applied physics 98 (1), 013906, 2005 | 34 | 2005 |
| Kinetic mechanism of conformational switch between bistable RNA hairpins X Xu, SJ Chen Journal of the American Chemical Society 134 (30), 12499-12507, 2012 | 31 | 2012 |
| Predicting structure and stability for RNA complexes with intermolecular loop–loop base-pairing S Cao, X Xu, SJ Chen RNA 20 (6), 835-845, 2014 | 27 | 2014 |
| Effects of long-range magnetic interactions on DLA aggregation XJ Xu, PG Cai, QL Ye, AG Xia, GX Ye Physics Letters A 338 (1), 1-7, 2005 | 27 | 2005 |
| A novel fiber-optic temperature sensor based on high temperature-dependent optical properties of ZnO film on sapphire fiber-ending P Cai, D Zhen, X Xu, Y Liu, N Chen, G Wei, C Sui Materials Science and Engineering: B 171 (1), 116-119, 2010 | 25 | 2010 |
| Quantitative understanding of SHAPE mechanism from RNA structure and dynamics analysis T Hurst, X Xu, P Zhao, SJ Chen The Journal of Physical Chemistry B 122, 4771-4783, 2018 | 24 | 2018 |
| Physics-based RNA structure prediction X Xu, SJ Chen Biophysics reports 1 (1), 2-13, 2015 | 24 | 2015 |
| Growth mechanism and stress relief patterns of Ni films deposited on silicone oil surfaces PG Cai, SJ Yu, XJ Xu, MG Chen, CH Sui, GX Ye Applied Surface Science 255 (20), 8352-8358, 2009 | 23 | 2009 |
| VfoldLA: a web server for loop assembly-based prediction of putative 3D RNA structures X Xu, C Zhao, SJ Chen Journal of Structural Biology 207 (3), 235-240, 2019 | 22 | 2019 |
