| PANDAseq: paired-end assembler for illumina sequences AP Masella, AK Bartram, JM Truszkowski, DG Brown, JD Neufeld BMC bioinformatics 13, 1-7, 2012 | 2300 | 2012 |
| Maximum likelihood phylogenetic inference is consistent on multiple sequence alignments, with or without gaps J Truszkowski, N Goldman Systematic biology 65 (2), 328-333, 2016 | 41 | 2016 |
| LSHPlace: fast phylogenetic placement using locality-sensitive hashing DG Brown, J Truszkowski Biocomputing 2013, 310-319, 2013 | 21 | 2013 |
| Comparative analysis of probabilistic models for activity recognition with an instrumented walker F Omar, M Sinn, J Truszkowski, P Poupart, J Tung, A Caine arXiv preprint arXiv:1203.3500, 2012 | 17 | 2012 |
| Fast phylogenetic tree reconstruction using locality-sensitive hashing DG Brown, J Truszkowski International Workshop on Algorithms in Bioinformatics, 14-29, 2012 | 15 | 2012 |
| Towards a Practical O(n logn) Phylogeny Algorithm DG Brown, J Truszkowski Algorithms in Bioinformatics: 11th International Workshop, WABI 2011 …, 2011 | 15 | 2011 |
| Fast error-tolerant quartet phylogeny algorithms DG Brown, J Truszkowski Theoretical Computer Science 483, 104-114, 2013 | 14 | 2013 |
| New decoding algorithms for Hidden Markov Models using distance measures on labellings DG Brown, J Truszkowski BMC bioinformatics 11, 1-9, 2010 | 12 | 2010 |
| Learning partial correlation graphs and graphical models by covariance queries G Lugosi, J Truszkowski, V Velona, P Zwiernik Journal of Machine Learning Research 22 (203), 1-41, 2021 | 7 | 2021 |
| Unsupervised multilingual alignment using Wasserstein barycenter X Lian, K Jain, J Truszkowski, P Poupart, Y Yu arXiv preprint arXiv:2002.00743, 2020 | 6 | 2020 |
| Towards a practical O(n logn) phylogeny algorithm J Truszkowski, Y Hao, DG Brown Algorithms for molecular biology 7, 1-10, 2012 | 6 | 2012 |
| More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs J Truszkowski, DG Brown BMC bioinformatics 12, 1-11, 2011 | 6 | 2011 |
| Online tree expansion could help solve the problem of scalability in Bayesian phylogenetics J Truszkowski, A Perrigo, D Broman, F Ronquist, A Antonelli Systematic Biology 72 (5), 1199-1206, 2023 | 5 | 2023 |
| Distribution and asymptotic behavior of the phylogenetic transfer distance M Dávila Felipe, JB Domelevo Entfellner, F Lemoine, J Truszkowski, ... Journal of Mathematical Biology 79 (2), 485-508, 2019 | 5 | 2019 |
| A framework for tracing timber following the Ukraine invasion T Mortier, J Truszkowski, M Norman, M Boner, B Buliga, C Chater, ... Nature Plants 10 (3), 390-401, 2024 | 3 | 2024 |
| A phylogenetic approach for weighting genetic sequences N De Maio, AV Alekseyenko, WJ Coleman-Smith, F Pardi, MA Suchard, ... BMC bioinformatics 22 (1), 285, 2021 | 3 | 2021 |
| Computing the probability of gene trees concordant with the species tree in the multispecies coalescent J Truszkowski, C Scornavacca, F Pardi Theoretical Population Biology 137, 22-31, 2021 | 3 | 2021 |
| Structure learning in graphical models by covariance queries G Lugosi, J Truszkowski, V Velona, P Zwiernik https://arxiv.org/abs/1906.09501, 2019 | 3 | 2019 |
| Fast reconstruction of phylogenetic trees using locality-sensitive hashing DG Brown, J Truszkowski arXiv preprint arXiv:1111.0379, 2011 | 3 | 2011 |
| Rapidly computing the phylogenetic transfer index J Truszkowski, O Gascuel, KM Swenson bioRxiv, 743948, 2019 | 2 | 2019 |
