| A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping SSP Rao, MH Huntley, NC Durand, EK Stamenova, ID Bochkov, ... Cell 159 (7), 1665-1680, 2014 | 7490 | 2014 |
| Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes AL Sanborn, SSP Rao, SC Huang, NC Durand, MH Huntley, AI Jewett, ... Proceedings of the National Academy of Sciences 112 (47), E6456-E6465, 2015 | 1696 | 2015 |
| Cohesin loss eliminates all loop domains SSP Rao, SC Huang, BG St Hilaire, JM Engreitz, EM Perez, ... Cell 171 (2), 305-320. e24, 2017 | 1650 | 2017 |
| Structural insights into µ-opioid receptor activation W Huang, A Manglik, AJ Venkatakrishnan, T Laeremans, EN Feinberg, ... Nature 524 (7565), 315-321, 2015 | 899 | 2015 |
| The energetics and physiological impact of cohesin extrusion L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ... Cell 173 (5), 1165-1178. e20, 2018 | 530 | 2018 |
| Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture EM Darrow, MH Huntley, O Dudchenko, EK Stamenova, NC Durand, ... Proceedings of the National Academy of Sciences 113 (31), E4504-E4512, 2016 | 288 | 2016 |
| ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL G Wutz, R Ladurner, BG St Hilaire, RR Stocsits, K Nagasaka, B Pignard, ... Elife 9, e52091, 2020 | 120 | 2020 |
| Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator AL Sanborn, BT Yeh, JT Feigerle, CV Hao, RJL Townshend, ... Elife 10, e68068, 2021 | 103 | 2021 |
| Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals MJ Rowley, A Poulet, MH Nichols, BJ Bixler, AL Sanborn, EA Brouhard, ... Genome research 30 (3), 447-458, 2020 | 75 | 2020 |
| Integrated intracellular organization and its variations in human iPS cells MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan, JE Arakaki, M Bailey, ... Nature 613 (7943), 345-354, 2023 | 62 | 2023 |
| Deep learning for semantic similarity A Sanborn, J Skryzalin CS224d: Deep Learning for Natural Language Processing Stanford, CA, USA …, 2015 | 51 | 2015 |
| Proof of Han's hook expansion conjecture K Carde, J Loubert, A Potechin, A Sanborn arXiv preprint arXiv:0808.0928, 2008 | 10 | 2008 |
| Author Correction: Structural insights into μ-opioid receptor activation W Huang, A Manglik, AJ Venkatakrishnan, T Laeremans, EN Feinberg, ... Nature 584 (7820), E16-E16, 2020 | 8 | 2020 |
| Methods and compositions for altering function and structure of chromatin loops and/or domains EL Aiden, ES Lander, S Rao, SC Huang, AL Sanborn, NC Durand, ... US Patent 11,214,800, 2022 | 7 | 2022 |
| Chromatin Extrusion Explains Key Features of Loop and Domain Formation in Wild‐type and Engineered Genomes A Sanborn, S Rao, SC Huang, N Durand, M Huntley, A Jewett, I Bochkov, ... The FASEB Journal 30, 588.1-588.1, 2016 | 4 | 2016 |
| ATOM-1: A foundation model for RNA structure and function built on chemical mapping data N Boyd, BM Anderson, B Townshend, R Chow, CJ Stephens, R Rangan, ... bioRxiv, 2023.12. 13.571579, 2023 | 2 | 2023 |
| Mapping variation in the morphological landscape of human cells with optical pooled CRISPRi screening RLD Labitigan, AL Sanborn, CV Hao, CK Chan, NM Belliveau, EM Brown, ... bioRxiv, 2022.12. 27.522042, 2022 | 2 | 2022 |
| Systems and methods to identify transcription factor activation domains and uses thereof RD Kornberg, A Sanborn, B Yeh US Patent 11,732,381, 2023 | | 2023 |
| Methods and compositions for altering function and structure of chromatin loops and/or domains EL Aiden, ES Lander, S Rao, SC Huang, AL Sanborn, NC Durand, ... US Patent App. 17/398,951, 2022 | | 2022 |
| Prediction and Mechanistic Dissection of Transcriptional Activation Domains Using Deep Learning and Pooled Screening AL Sanborn Stanford University, 2021 | | 2021 |
