| Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ... Science 330 (6012), 1775-1787, 2010 | 1106 | 2010 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1085 | 2010 |
| ArrayExpress—a public repository for microarray gene expression data at the EBI H Parkinson, U Sarkans, M Shojatalab, N Abeygunawardena, S Contrino, ... Nucleic acids research 33 (suppl_1), D553-D555, 2005 | 469 | 2005 |
| InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data RN Smith, J Aleksic, D Butano, A Carr, S Contrino, F Hu, M Lyne, R Lyne, ... Bioinformatics 28 (23), 3163-3165, 2012 | 288 | 2012 |
| Araport: the Arabidopsis information portal V Krishnakumar, MR Hanlon, S Contrino, ES Ferlanti, S Karamycheva, ... Nucleic acids research 43 (D1), D1003-D1009, 2015 | 232 | 2015 |
| modMine: flexible access to modENCODE data S Contrino, RN Smith, D Butano, A Carr, F Hu, R Lyne, K Rutherford, ... Nucleic acids research 40 (D1), D1082-D1088, 2012 | 163 | 2012 |
| InterMine: extensive web services for modern biology A Kalderimis, R Lyne, D Butano, S Contrino, M Lyne, J Heimbach, F Hu, ... Nucleic acids research 42 (W1), W468-W472, 2014 | 123 | 2014 |
| ArrayExpress: a public database of gene expression data at EBI P Rocca-Serra, A Brazma, H Parkinson, U Sarkans, M Shojatalab, ... Comptes rendus. Biologies 326 (10-11), 1075-1078, 2003 | 115 | 2003 |
| The ArrayExpress gene expression database: a software engineering and implementation perspective U Sarkans, H Parkinson, GG Lara, A Oezcimen, A Sharma, ... Bioinformatics 21 (8), 1495-1501, 2005 | 67 | 2005 |
| ThaleMine: a warehouse for Arabidopsis data integration and discovery V Krishnakumar, S Contrino, CY Cheng, I Belyaeva, ES Ferlanti, JR Miller, ... Plant and Cell Physiology 58 (1), e4-e4, 2017 | 51 | 2017 |
| The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details NL Washington, EO Stinson, MD Perry, P Ruzanov, S Contrino, R Smith, ... Database 2011, bar023, 2011 | 48 | 2011 |
| Protein sequence annotation in the genome era: the annotation concept of SWISS-PROT+ TREMBL. R Apweiler, A Gateau, S Contrino, MJ Martin, V Junker, C O'Donovan, ... Ismb 5, 33-43, 1997 | 45 | 1997 |
| The role SWISS-PROT and TrEMBL play in the genome research environment V Junker, S Contrino, W Fleischmann, H Hermjakob, F Lang, M Magrane, ... Journal of Biotechnology 78 (3), 221-234, 2000 | 36 | 2000 |
| Cross‐organism analysis using InterMine R Lyne, J Sullivan, D Butano, S Contrino, J Heimbach, F Hu, A Kalderimis, ... genesis 53 (8), 547-560, 2015 | 30 | 2015 |
| COM e: the ontology of bioinorganic proteins K Degtyarenko, S Contrino BMC Structural Biology 4, 1-10, 2004 | 25 | 2004 |
| Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE QM Trinh, FYA Jen, Z Zhou, KM Chu, MD Perry, ET Kephart, S Contrino, ... BMC genomics 14, 1-9, 2013 | 8 | 2013 |
| Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress G Mukherjee, N Abeygunawardena, H Parkinson, S Contrino, S Durinck, ... Plant physiology 139 (2), 632-636, 2005 | 8 | 2005 |
| SWISS-PROT and its computer-annotated supplement TrEMBL: how to produce high-quality automatic annotation R Apweiler, C O’Donovan, MJ Martin, W Fleischmann, H Hermjakob, ... Systems, Cybernetics and Informatics, Orlando, Florida, IIIS, 1998 | 5 | 1998 |
| HumanMine: advanced data searching, analysis and cross-species comparison R Lyne, A Bazaga, D Butano, S Contrino, J Heimbach, F Hu, A Kalderimis, ... Database 2022, baac054, 2022 | 4 | 2022 |
| Making linked data SPARQL with the InterMine biological data warehouse M Déraspe, G Binkley, D Butano, M Chadwick, JM Cherry, J Clark-Casey, ... CEUR Workshop Proceedings 1795, 2016 | 2 | 2016 |
