| Flame (v2. 0): advanced integration and interpretation of functional enrichment results from multiple sources E Karatzas, FA Baltoumas, E Aplakidou, PI Kontou, P Stathopoulos, ... Bioinformatics 39 (8), btad490, 2023 | 6 | 2023 |
| Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters FA Baltoumas, E Karatzas, D Paez-Espino, NK Venetsianou, E Aplakidou, ... Frontiers in Bioinformatics 3, 1157956, 2023 | 3 | 2023 |
| kmerDB: a database encompassing the set of genomic and proteomic sequence information for each species I Mouratidis, FA Baltoumas, N Chantzi, M Patsakis, CSY Chan, ... Computational and Structural Biotechnology Journal 23, 1919-1928, 2024 | 2 | 2024 |
| Visualizing metagenomic and metatranscriptomic data: A comprehensive review E Aplakidou, N Vergoulidis, M Chasapi, NK Venetsianou, M Kokoli, ... Computational and Structural Biotechnology Journal, 2024 | | 2024 |
| Quadrupia: Derivation of G-quadruplexes for organismal genomes across the tree of life N Chantzi, A Nayak, FA Baltoumas, E Aplakidou, SW Liew, JE Galuh, ... bioRxiv, 2024.07. 09.602008, 2024 | | 2024 |
