The pioneer transcription factor FoxA maintains an accessible nucleosome configuration at enhancers for tissue-specific gene activation M Iwafuchi-Doi, G Donahue, A Kakumanu, JA Watts, S Mahony, BF Pugh, ... Molecular cell 62 (1), 79-91, 2016 | 422 | 2016 |
Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq A Kakumanu, MMR Ambavaram, C Klumas, A Krishnan, U Batlang, ... Plant physiology 160 (2), 846-867, 2012 | 376 | 2012 |
Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes B Aydin, A Kakumanu, M Rossillo, M Moreno-Estellés, G Garipler, ... Nature neuroscience 22 (6), 897-908, 2019 | 131 | 2019 |
A multi-step transcriptional and chromatin state cascade underlies motor neuron programming from embryonic stem cells S Velasco*, MM Ibrahim*, A Kakumanu*, G Garipler, B Aydin, ... Cell Stem Cell, 2016 | 105 | 2016 |
An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding S Mahony, MD Edwards, EO Mazzoni, RI Sherwood, A Kakumanu, ... PLoS computational biology 10 (3), e1003501, 2014 | 85 | 2014 |
Metabolic and transcriptional reprogramming in developing soybean (Glycine max) embryos E Collakova, D Aghamirzaie, Y Fang, C Klumas, F Tabataba, ... Metabolites 3 (2), 347-372, 2013 | 75 | 2013 |
Deconvolving sequence features that discriminate between overlapping regulatory annotations A Kakumanu, S Velasco, E Mazzoni, S Mahony PLoS computational biology 13 (10), e1005795, 2017 | 16 | 2017 |
Computational Modelling of Sequence Features Driving Transcription Factor Binding in Neuronal Reprogramming A Kakumanu The Pennsylvania State University, 2017 | | 2017 |
Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos R Grene, LS Heath, E Myers, F Tabataba, A Kakumanu, C Klumas, ... | | 2013 |