A provenance-based adaptive scheduling heuristic for parallel scientific workflows in clouds D de Oliveira, KACS Ocaña, F Baião, M Mattoso Journal of grid Computing 10, 521-552, 2012 | 140 | 2012 |
Sciphy: a cloud-based workflow for phylogenetic analysis of drug targets in protozoan genomes KACS Ocaña, D de Oliveira, E Ogasawara, AMR Dávila, AAB Lima, ... Advances in Bioinformatics and Computational Biology: 6th Brazilian …, 2011 | 116 | 2011 |
Capturing and querying workflow runtime provenance with PROV: a practical approach F Costa, V Silva, D De Oliveira, K Ocaña, E Ogasawara, J Dias, M Mattoso Proceedings of the Joint EDBT/ICDT 2013 Workshops, 282-289, 2013 | 101 | 2013 |
Dynamic steering of HPC scientific workflows: A survey M Mattoso, J Dias, KACS Ocana, E Ogasawara, F Costa, F Horta, V Silva, ... Future Generation Computer Systems 46, 100-113, 2015 | 84 | 2015 |
An adaptive parallel execution strategy for cloud‐based scientific workflows D de Oliveira, E Ogasawara, K Ocaña, F Baião, M Mattoso Concurrency and Computation: Practice and Experience 24 (13), 1531-1550, 2012 | 63 | 2012 |
Performance evaluation of parallel strategies in public clouds: A study with phylogenomic workflows D De Oliveira, KACS Ocana, E Ogasawara, J Dias, J Gonçalves, F Baiao, ... Future Generation Computer Systems 29 (7), 1816-1825, 2013 | 48 | 2013 |
Optimizing phylogenetic analysis using scihmm cloud-based scientific workflow KACS Ocaña, D de Oliveira, J Dias, E Ogasawara, M Mattoso 2011 IEEE Seventh International Conference on eScience, 62-69, 2011 | 44 | 2011 |
Exploring molecular evolution reconstruction using a parallel cloud based scientific workflow KACS Ocaña, D de Oliveira, F Horta, J Dias, E Ogasawara, M Mattoso Advances in Bioinformatics and Computational Biology: 7th Brazilian …, 2012 | 40 | 2012 |
Parallel computing in genomic research: advances and applications K Ocaña, D de Oliveira Advances and applications in bioinformatics and chemistry, 23-35, 2015 | 39 | 2015 |
User-steering of HPC workflows: state-of-the-art and future directions M Mattoso, K Ocana, F Horta, J Dias, E Ogasawara, V Silva, D de Oliveira, ... Proceedings of the 2nd ACM SIGMOD Workshop on Scalable Workflow Execution …, 2013 | 37 | 2013 |
A performance evaluation of x-ray crystallography scientific workflow using scicumulus D de Oliveira, K Ocana, E Ogasawara, J Dias, F Baiao, M Mattoso 2011 IEEE 4th International Conference on Cloud Computing, 708-715, 2011 | 34 | 2011 |
ProtozoaDB: dynamic visualization and exploration of protozoan genomes AMR Davila, PN Mendes, G Wagner, DA Tschoeke, RRC Cuadrat, ... Nucleic acids research 36 (suppl_1), D547-D552, 2007 | 29 | 2007 |
Dimensioning the virtual cluster for parallel scientific workflows in clouds D de Oliveira, V Viana, E Ogasawara, K Ocana, M Mattoso Proceedings of the 4th ACM workshop on Scientific cloud computing, 5-12, 2013 | 23 | 2013 |
Enabling re-executions of parallel scientific workflows using runtime provenance data F Costa, D de Oliveira, KACS Ocaña, E Ogasawara, M Mattoso Provenance and Annotation of Data and Processes: 4th International …, 2012 | 21 | 2012 |
Provenance-based fault tolerance technique recommendation for cloud-based scientific workflows: a practical approach T Guedes, LA Jesus, KACS Ocaña, LMA Drummond, D de Oliveira Cluster Computing 23 (1), 123-148, 2020 | 20 | 2020 |
Exploring large scale receptor-ligand pairs in molecular docking workflows in HPC clouds K Ocaña, S Benza, D De Oliveira, J Dias, M Mattoso 2014 IEEE International Parallel & Distributed Processing Symposium …, 2014 | 20 | 2014 |
Designing a parallel cloud based comparative genomics workflow to improve phylogenetic analyses KACS Ocaña, D De Oliveira, J Dias, E Ogasawara, M Mattoso Future Generation Computer Systems 29 (8), 2205-2219, 2013 | 20 | 2013 |
Using domain-specific data to enhance scientific workflow steering queries JC de AR Gonçalves, D de Oliveira, KACS Ocaña, E Ogasawara, ... Provenance and Annotation of Data and Processes: 4th International …, 2012 | 20 | 2012 |
Analyzing provenance across heterogeneous provenance graphs W Oliveira, P Missier, K Ocaña, D de Oliveira, V Braganholo Provenance and Annotation of Data and Processes: 6th International …, 2016 | 17 | 2016 |
Phylogenomics-based reconstruction of protozoan species tree KAS Ocaña, AM Dávila Evolutionary Bioinformatics 7, EBO. S6861, 2011 | 17 | 2011 |