| Structure-based druggability assessment of the mammalian structural proteome with inclusion of light protein flexibility KA Loving, A Lin, AC Cheng PLoS computational biology 10 (7), e1003741, 2014 | 33 | 2014 |
| Combining high-resolution and exact calibration to boost statistical power: A well-calibrated score function for high-resolution ms2 data A Lin, JJ Howbert, WS Noble Journal of proteome research 17 (11), 3644-3656, 2018 | 22 | 2018 |
| Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach OP Leiser, ED Merkley, BH Clowers, BL Deatherage Kaiser, A Lin, ... PloS one 10 (11), e0142997, 2015 | 22 | 2015 |
| Improving peptide-level mass spectrometry analysis via double competition A Lin, T Short, WS Noble, U Keich Journal of Proteome Research 21 (10), 2412-2420, 2022 | 17 | 2022 |
| Accurately assigning peptides to spectra when only a subset of peptides are relevant A Lin, DL Plubell, U Keich, WS Noble Journal of proteome research 20 (8), 4153-4164, 2021 | 16 | 2021 |
| Effects of bacterial inactivation methods on downstream proteomic analysis A Lin, ED Merkley, BH Clowers, JR Hutchison, HW Kreuzer Journal of microbiological methods 112, 3-10, 2015 | 14 | 2015 |
| Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague ED Merkley, LH Sego, A Lin, OP Leiser, BLD Kaiser, JN Adkins, PS Keim, ... Plos one 12 (8), e0183478, 2017 | 9 | 2017 |
| The Crux toolkit for analysis of bottom-up tandem mass spectrometry proteomics data A Kertesz-Farkas, FL Nii Adoquaye Acquaye, K Bhimani, JK Eng, ... Journal of proteome research 22 (2), 561-569, 2023 | 6 | 2023 |
| 2018 YPIC Challenge: A case study in characterizing an unknown protein sample L Pino, A Lin, W Bittremieux Journal of proteome research 18 (11), 3936-3943, 2019 | 5 | 2019 |
| Target‐decoy false discovery rate estimation using Crema A Lin, D See, WE Fondrie, U Keich, WS Noble Proteomics 24 (8), 2300084, 2024 | 4 | 2024 |
| Proteomic signatures differentiating Bacillus anthracis Sterne sporulation on soil relative to laboratory media DS Wunschel, JR Hutchison, BLD Kaiser, ED Merkley, BM Hess, A Lin, ... Analyst 143 (1), 123-132, 2018 | 4 | 2018 |
| Computational and systems biology advances to enable bioagent agnostic signatures A Lin, CM Torres, EC Hobbs, J Bardhan, SB Aley, CT Spencer, KL Taylor, ... Health security 22 (2), 130-139, 2024 | 1 | 2024 |
| MS1Connect: a mass spectrometry run similarity measure A Lin, BL Deatherage Kaiser, JR Hutchison, JA Bilmes, WS Noble Bioinformatics 39 (2), btad058, 2023 | 1 | 2023 |
| Introducing molecular hypernetworks for discovery in multidimensional metabolomics data SM Colby, MR Shapiro, A Lin, A Bilbao, CD Broeckling, E Purvine, ... bioRxiv, 2023.09. 29.560191, 2023 | 1 | 2023 |
| Predicting the similarity of two mass spectrometry runs using only MS1 data A Shouaib, A Lin bioRxiv, 2023.11. 29.569301, 2023 | | 2023 |
| Improving peptide detection in mass spectrometry-based proteomics A Lin University of Washington, 2021 | | 2021 |
