Genome-Wide Analysis of Selection on the Malaria Parasite Plasmodium falciparum in West African Populations of Differing Infection Endemicity VA Mobegi, CW Duffy, A Amambua-Ngwa, KM Loua, E Laman, ... Molecular Biology and Evolution 31 (6), 1490-1499, 2014 | 130 | 2014 |
Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres TD Otto, U Böhme, M Sanders, A Reid, EI Bruske, CW Duffy, PC Bull, ... Wellcome open research 3, 2018 | 117 | 2018 |
Checks and balances? DNA replication and the cell cycle in Plasmodium H Matthews, CW Duffy, CJ Merrick Parasites & vectors 11, 1-13, 2018 | 114 | 2018 |
Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi S Assefa, C Lim, MD Preston, CW Duffy, MB Nair, SA Adroub, KA Kadir, ... Proceedings of the National Academy of Sciences 112 (42), 13027-13032, 2015 | 102 | 2015 |
Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species PCS Divis, B Singh, F Anderios, S Hisam, A Matusop, CH Kocken, ... PLoS Pathogens 11 (5), e1004888, 2015 | 96 | 2015 |
Applying next-generation sequencing to track falciparum malaria in sub-Saharan Africa SK Tessema, J Raman, CW Duffy, DS Ishengoma, A Amambua-Ngwa, ... Malaria journal 18, 1-9, 2019 | 60 | 2019 |
Trypanosoma vivax displays a clonal population structure CW Duffy, LJ Morrison, A Black, GL Pinchbeck, RM Christley, ... International Journal for Parasitology 39 (13), 1475-1483, 2009 | 57 | 2009 |
Changes in malaria parasite drug resistance in an endemic population over a 25-year period with resulting genomic evidence of selection DC Nwakanma, CW Duffy, A Amambua-Ngwa, EC Oriero, KA Bojang, ... The Journal of infectious diseases 209 (7), 1126-1135, 2014 | 53 | 2014 |
An invariant Trypanosoma vivax vaccine antigen induces protective immunity D Autheman, C Crosnier, S Clare, DA Goulding, C Brandt, K Harcourt, ... Nature 595 (7865), 96-100, 2021 | 52 | 2021 |
First evidence that parasite infecting apparent aparasitemic serological suspects in human African trypanosomiasis are Trypanosoma brucei gambiense and are similar to those … J Kaboré, M Koffi, B Bucheton, A MacLeod, C Duffy, H Ilboudo, M Camara, ... Infection, genetics and evolution 11 (6), 1250-1255, 2011 | 42 | 2011 |
Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity CW Duffy, SA Assefa, J Abugri, N Amoako, S Owusu-Agyei, T Anyorigiya, ... BMC genomics 16, 1-11, 2015 | 40 | 2015 |
Widespread distribution of Plasmodium vivax malaria in Mauritania on the interface of the Maghreb and West Africa H Ba, CW Duffy, AD Ahouidi, YB Deh, MY Diallo, A Tandia, DJ Conway Malaria journal 15, 1-6, 2016 | 39 | 2016 |
Population genetics of Trypanosoma brucei rhodesiense: clonality and diversity within and between foci CW Duffy, L MacLean, L Sweeney, A Cooper, CMR Turner, A Tait, ... PLoS NTD 7 (11), e2526, 2013 | 39 | 2013 |
Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development CW Duffy, A Amambua-Ngwa, AD Ahouidi, M Diakite, GA Awandare, H Ba, ... Scientific Reports 8 (1), 15763, 2018 | 36 | 2018 |
Schizont transcriptome variation among clinical isolates and laboratory-adapted clones of the malaria parasite Plasmodium falciparum SJ Tarr, O Díaz-Ingelmo, LB Stewart, SE Hocking, L Murray, CW Duffy, ... BMC genomics 19, 1-13, 2018 | 32 | 2018 |
Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution CW Duffy, H Ba, S Assefa, AD Ahouidi, YB Deh, A Tandia, FCM Kirsebom, ... Molecular ecology 26 (11), 2880-2894, 2017 | 32 | 2017 |
Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections L Murray, VA Mobegi, CW Duffy, SA Assefa, DP Kwiatkowski, E Laman, ... Malaria journal 15, 1-6, 2016 | 28 | 2016 |
Variant antigen diversity in Trypanosoma vivax is not driven by recombination S Silva Pereira, KJG de Almeida Castilho Neto, CW Duffy, P Richards, ... Nature Communications 11 (1), 844, 2020 | 24 | 2020 |
Trypanosome genetics: populations, phenotypes and diversity A Tait, LJ Morrison, CW Duffy, A Cooper, CMR Turner, A Macleod Veterinary Parasitology 181 (1), 61-68, 2011 | 22 | 2011 |
Genome‐wide mosaicism in divergence between zoonotic malaria parasite subpopulations with separate sympatric transmission cycles PCS Divis, CW Duffy, KA Kadir, B Singh, DJ Conway Molecular ecology 27 (4), 860-870, 2018 | 20 | 2018 |