| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ... Genome research 22 (9), 1813-1831, 2012 | 2259 | 2012 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1087 | 2010 |
| Comprehensive analysis of the chromatin landscape in Drosophila melanogaster PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ... Nature 471 (7339), 480-485, 2011 | 987 | 2011 |
| Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ... Nature genetics 52 (3), 331-341, 2020 | 566 | 2020 |
| Comparative analysis of metazoan chromatin organization JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ... Nature 512 (7515), 449-452, 2014 | 422 | 2014 |
| The histone chaperone CAF-1 safeguards somatic cell identity S Cheloufi, U Elling, B Hopfgartner, YL Jung, J Murn, M Ninova, ... Nature 528 (7581), 218-224, 2015 | 287 | 2015 |
| Nature and function of insulator protein binding sites in the Drosophila genome YB Schwartz, D Linder-Basso, PV Kharchenko, MY Tolstorukov, M Kim, ... Genome research 22 (11), 2188-2198, 2012 | 204 | 2012 |
| Impact of sequencing depth in ChIP-seq experiments YL Jung, LJ Luquette, JWK Ho, F Ferrari, M Tolstorukov, A Minoda, ... Nucleic acids research 42 (9), e74-e74, 2014 | 200 | 2014 |
| Genome-wide analysis of Wilms’ tumor 1-controlled gene expression in podocytes reveals key regulatory mechanisms M Kann, S Ettou, YL Jung, MO Lenz, ME Taglienti, PJ Park, B Schermer, ... Journal of the American Society of Nephrology 26 (9), 2097-2104, 2015 | 120 | 2015 |
| Sex comb on midleg (Scm) is a functional link between PcG-repressive complexes in Drosophila H Kang, KA McElroy, YL Jung, AA Alekseyenko, BM Zee, PJ Park, ... Genes & development 29 (11), 1136-1150, 2015 | 93 | 2015 |
| Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain NC Riddle, YL Jung, T Gu, AA Alekseyenko, D Asker, H Gui, ... Public Library of Science 8 (9), e1002954, 2012 | 72 | 2012 |
| Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context AA Alekseyenko, JWK Ho, S Peng, M Gelbart, MY Tolstorukov, ... PLoS genetics 8 (4), e1002646, 2012 | 61 | 2012 |
| “Jump start and gain” model for dosage compensation in Drosophila based on direct sequencing of nascent transcripts F Ferrari, A Plachetka, AA Alekseyenko, YL Jung, F Ozsolak, ... Cell reports 5 (3), 629-636, 2013 | 50 | 2013 |
| Bivalent complexes of PRC1 with orthologs of BRD4 and MOZ/MORF target developmental genes in Drosophila H Kang, YL Jung, KA McElroy, BM Zee, HA Wallace, JL Woolnough, ... Genes & Development 31 (19), 1988-2002, 2017 | 38 | 2017 |
| ERα-associated translocations underlie oncogene amplifications in breast cancer JJK Lee, YL Jung, TC Cheong, J Espejo Valle-Inclan, C Chu, DC Gulhan, ... Nature 618 (7967), 1024-1032, 2023 | 35 | 2023 |
| Epigenetic transcriptional reprogramming by WT1 mediates a repair response during podocyte injury S Ettou, YL Jung, T Miyoshi, D Jain, K Hiratsuka, V Schumacher, ... Science Advances 6 (30), eabb5460, 2020 | 25 | 2020 |
| Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing I Cortés-Ciriano, JK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ... BioRxiv, 333617, 2018 | 23 | 2018 |
| EED, a member of the polycomb group, is required for nephron differentiation and the maintenance of nephron progenitor cells L Zhang, S Ettou, M Khalid, M Taglienti, D Jain, YL Jung, C Seager, Y Liu, ... Development 145 (14), dev157149, 2018 | 20 | 2018 |
| upSET, the Drosophila homologue of SET3, Is Required for Viability and the Proper Balance of Active and Repressive Chromatin Marks KA McElroy, YL Jung, BM Zee, CI Wang, PJ Park, MI Kuroda G3: Genes, Genomes, Genetics 7 (2), 625-635, 2017 | 17 | 2017 |
| Characterizing the molecular impact of KMT2D variants on the epigenetic and transcriptional landscapes in Kabuki syndrome YL Jung, C Hung, J Choi, EA Lee, O Bodamer Human Molecular Genetics 32 (13), 2251-2261, 2023 | 7 | 2023 |
