| Bioinformatics resources and tools for conformational B‐cell epitope prediction P Sun, H Ju, Z Liu, Q Ning, J Zhang, X Zhao, Y Huang, Z Ma, Y Li Computational and mathematical methods in medicine 2013 (1), 943636, 2013 | 137 | 2013 |
| dForml (KNN)-PseAAC: Detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components Q Ning, Z Ma, X Zhao Journal of theoretical biology 470, 43-49, 2019 | 66 | 2019 |
| Accurate in silico identification of protein succinylation sites using an iterative semi-supervised learning technique X Zhao, Q Ning, H Chai, Z Ma Journal of theoretical biology 374, 60-65, 2015 | 52 | 2015 |
| Detecting succinylation sites from protein sequences using ensemble support vector machine Q Ning, X Zhao, L Bao, Z Ma, X Zhao BMC bioinformatics 19 (1), 1-9, 2018 | 42 | 2018 |
| A novel method for Identification of Glutarylation sites combining Borderline-SMOTE with Tomek links technique in imbalanced data Q Ning, X Zhao, Z Ma IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (5 …, 2021 | 39 | 2021 |
| PGluS: prediction of protein S-glutathionylation sites with multiple features and analysis X Zhao, Q Ning, M Ai, H Chai, M Yin Molecular BioSystems 11 (3), 923-929, 2015 | 26 | 2015 |
| Position‐specific analysis and prediction of protein pupylation sites based on multiple features X Zhao, J Dai, Q Ning, Z Ma, M Yin, P Sun BioMed research international 2013 (1), 109549, 2013 | 26 | 2013 |
| Identifying N6-methyladenosine sites using extreme gradient boosting system optimized by particle swarm optimizer X Zhao, Y Zhang, Q Ning, H Zhang, J Ji, M Yin Journal of theoretical biology 467, 39-47, 2019 | 22 | 2019 |
| AMHMDA: attention aware multi-view similarity networks and hypergraph learning for miRNA–disease associations identification Q Ning, Y Zhao, J Gao, C Chen, X Li, T Li, M Yin Briefings in Bioinformatics 24 (2), bbad094, 2023 | 21 | 2023 |
| Identifying drug–target interactions via heterogeneous graph attention networks combined with cross-modal similarities L Jiang, J Sun, Y Wang, Q Ning, N Luo, M Yin Briefings in Bioinformatics 23 (2), bbac016, 2022 | 19 | 2022 |
| SSKM_Succ: a novel succinylation sites prediction method incorporating K-means clustering with a new semi-supervised learning algorithm Q Ning, Z Ma, X Zhao, M Yin IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (1 …, 2020 | 15 | 2020 |
| Analysis and prediction of human acetylation using a cascade classifier based on support vector machine Q Ning, M Yu, J Ji, Z Ma, X Zhao BMC bioinformatics 20, 1-15, 2019 | 15 | 2019 |
| Identification of Protein Pupylation Sites Using Bi‐Profile Bayes Feature Extraction and Ensemble Learning X Zhao, J Zhang, Q Ning, P Sun, Z Ma, M Yin Mathematical Problems in Engineering 2013 (1), 283129, 2013 | 14 | 2013 |
| PGlcS: prediction of protein O-GlcNAcylation sites with multiple features and analysis X Zhao, Q Ning, H Chai, M Ai, Z Ma Journal of Theoretical Biology 380, 524-529, 2015 | 13 | 2015 |
| Identification of S-glutathionylation sites in species-specific proteins by incorporating five sequence-derived features into the general pseudo-amino acid composition X Zhao, Q Ning, M Ai, H Chai, G Yang Journal of Theoretical Biology 398, 96-102, 2016 | 9 | 2016 |
| FCCCSR_Glu: a semi-supervised learning model based on FCCCSR algorithm for prediction of glutarylation sites Q Ning, Z Qi, Y Wang, A Deng, C Chen Briefings in Bioinformatics 23 (6), bbac421, 2022 | 4 | 2022 |
| DLF-Sul: a multi-module deep learning framework for prediction of S-sulfinylation sites in proteins Q Ning, J Li Briefings in Bioinformatics 23 (5), bbac323, 2022 | 4 | 2022 |
| Heterogeneous graph convolutional network integrates multi-modal similarities for drug-target interaction prediction L Jiang, J Sun, Y Wang, Q Ning, N Luo, M Yin 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 4 | 2021 |
| m7G-DLSTM: Intergrating directional Double-LSTM and fully connected network for RNA N7-methlguanosine sites prediction in human Q Ning, M Sheng Chemometrics and Intelligent Laboratory Systems 217, 104398, 2021 | 4 | 2021 |
| ABC-Gly: Identifying protein lysine glycation sites with artificial bee colony algorithm Y Yao, X Zhao, Q Ning, J Zhou Current Proteomics 18 (1), 18-26, 2021 | 2 | 2021 |
