Single-cell mapping of lineage and identity in direct reprogramming BA Biddy, W Kong, K Kamimoto, C Guo, SE Waye, T Sun, SA Morris Nature 564 (7735), 219-224, 2018 | 304 | 2018 |
Dissecting cell identity via network inference and in silico gene perturbation K Kamimoto, B Stringa, CM Hoffmann, K Jindal, L Solnica-Krezel, ... Nature 614 (7949), 742-751, 2023 | 213 | 2023 |
Adaptive remodeling of the biliary architecture underlies liver homeostasis K Kaneko, K Kamimoto, A Miyajima, T Itoh Hepatology 61 (6), 2056-2066, 2015 | 115 | 2015 |
CellOracle: Dissecting cell identity via network inference and in silico gene perturbation K Kamimoto, CM Hoffmann, SA Morris BioRxiv, 2020.02. 17.947416, 2020 | 104 | 2020 |
Heterogeneity and stochastic growth regulation of biliary epithelial cells dictate dynamic epithelial tissue remodeling K Kamimoto, K Kaneko, CYY Kok, H Okada, A Miyajima, T Itoh Elife 5, e15034, 2016 | 102 | 2016 |
CellTag Indexing: genetic barcode-based sample multiplexing for single-cell genomics C Guo, W Kong, K Kamimoto, GC Rivera-Gonzalez, X Yang, Y Kirita, ... Genome biology 20, 1-13, 2019 | 83 | 2019 |
CellTagging: combinatorial indexing to simultaneously map lineage and identity at single-cell resolution W Kong, BA Biddy, K Kamimoto, JM Amrute, EG Butka, SA Morris Nature protocols 15 (3), 750-772, 2020 | 69 | 2020 |
The coding and long noncoding single-cell atlas of the developing human fetal striatum VD Bocchi, P Conforti, E Vezzoli, D Besusso, C Cappadona, T Lischetti, ... Science 372 (6542), eabf5759, 2021 | 50 | 2021 |
Multidimensional imaging of liver injury repair in mice reveals fundamental role of the ductular reaction K Kamimoto, Y Nakano, K Kaneko, A Miyajima, T Itoh Communications Biology 3 (1), 289, 2020 | 42 | 2020 |
Basal epithelial stem cells cross an alarmin checkpoint for postviral lung disease K Wu, K Kamimoto, Y Zhang, K Yang, SP Keeler, BJ Gerovac, EV Agapov, ... The Journal of clinical investigation 131 (19), 2021 | 37 | 2021 |
Single-cell analysis reveals regional reprogramming during adaptation to massive small bowel resection in mice KM Seiler, SE Waye, W Kong, K Kamimoto, A Bajinting, WH Goo, ... Cellular and molecular gastroenterology and hepatology 8 (3), 407-426, 2019 | 30 | 2019 |
Defining cardiac functional recovery in end-stage heart failure at single-cell resolution JM Amrute, L Lai, P Ma, AL Koenig, K Kamimoto, A Bredemeyer, ... Nature cardiovascular research 2 (4), 399-416, 2023 | 21* | 2023 |
The transcription factor Klf5 is essential for intrahepatic biliary epithelial tissue remodeling after cholestatic liver injury H Okada, M Yamada, K Kamimoto, CYY Kok, K Kaneko, M Ema, ... Journal of Biological Chemistry 293 (17), 6214-6229, 2018 | 18 | 2018 |
Gene regulatory network reconfiguration in direct lineage reprogramming K Kamimoto, MT Adil, K Jindal, CM Hoffmann, W Kong, X Yang, SA Morris Stem Cell Reports 18 (1), 97-112, 2023 | 17 | 2023 |
Single-cell lineage capture across genomic modalities with CellTag-multi reveals fate-specific gene regulatory changes K Jindal, MT Adil, N Yamaguchi, X Yang, HC Wang, K Kamimoto, ... Nature Biotechnology 42 (6), 946-959, 2024 | 14 | 2024 |
Multiomic single-cell lineage tracing to dissect fate-specific gene regulatory programs K Jindal, MT Adil, N Yamaguchi, X Yang, HC Wang, K Kamimoto, ... bioRxiv, 2022.10. 23.512790, 2022 | 8 | 2022 |
CellTag Indexing: a genetic barcode-based multiplexing tool for single-cell technologies C Guo, BA Biddy, K Kamimoto, W Kong, SA Morris bioRxiv, 2018 | 6 | 2018 |
Ngn3-positive cells arise from pancreatic duct cells C Kimura-Nakajima, K Sakaguchi, Y Hatano, M Matsumoto, Y Okazaki, ... International Journal of Molecular Sciences 22 (16), 8548, 2021 | 5 | 2021 |
A method for identifying mouse pancreatic ducts C Nakajima, K Kamimoto, K Miyajima, M Matsumoto, Y Okazaki, ... Tissue Engineering Part C: Methods 24 (8), 480-485, 2018 | 3 | 2018 |
Breaking New Ground in the Landscape of Single-Cell Analysis K Kamimoto, SA Morris Cell systems 6 (1), 5-7, 2018 | 3 | 2018 |