SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 22225 | 2012 |
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 1992* | 2013 |
ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 131 | 2014 |
Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly S Kim, YS Cho, HM Kim, O Chung, H Kim, S Jho, H Seomun, J Kim, ... Genome biology 17, 1-12, 2016 | 111 | 2016 |
dipSPAdes: assembler for highly polymorphic diploid genomes Y Safonova, A Bankevich, PA Pevzner Journal of Computational Biology 22 (6), 528-545, 2015 | 103 | 2015 |
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads A Bankevich, AV Bzikadze, M Kolmogorov, D Antipov, PA Pevzner Nature biotechnology 40 (7), 1075-1081, 2022 | 71 | 2022 |
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ... Genome biology 20, 1-14, 2019 | 57 | 2019 |
TruSPAdes: barcode assembly of TruSeq synthetic long reads A Bankevich, PA Pevzner Nature methods 13 (3), 248-250, 2016 | 52 | 2016 |
cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs I Tolstoganov, A Bankevich, Z Chen, PA Pevzner Bioinformatics 35 (14), i61-i70, 2019 | 31 | 2019 |
Joint analysis of long and short reads enables accurate estimates of microbiome complexity A Bankevich, PA Pevzner Cell systems 7 (2), 192-200. e3, 2018 | 13* | 2018 |
Bounds of the number of leaves of spanning trees AV Bankevich, DV Karpov Journal of Mathematical Sciences 184 (5), 564-572, 2012 | 12 | 2012 |
mosaicFlye: Resolving long mosaic repeats using long error-prone reads A Bankevich, P Pevzner biorxiv, 2020.01. 15.908285, 2020 | 9* | 2020 |
ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs T Dvorkina, A Bankevich, A Sorokin, F Yang, B Adu-Oppong, R Williams, ... Microbiome 9, 1-14, 2021 | 6 | 2021 |
Bounds of the number of leaves of spanning trees in graphs without triangles AV Bankevich Journal of Mathematical Sciences 184 (5), 557-563, 2012 | 5 | 2012 |
Estimating the Quality of Genome Assembly from HiFi Reads A Bankevich Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024 | | 2024 |
Joint analysis of long and short reads enables accurate estimates of microbiome complexity A Bankevich, PA Pevzner Cell systems 7 (2), 192-200. e3, 2018 | | 2018 |