| Genome sequence-based species delimitation with confidence intervals and improved distance functions JP Meier-Kolthoff, AF Auch, HP Klenk, M Göker BMC bioinformatics 14 (1), 60, 2013 | 5600 | 2013 |
| MEGAN analysis of metagenomic data DH Huson, AF Auch, J Qi, SC Schuster Genome research 17 (3), 377-386, 2007 | 3436 | 2007 |
| Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison AF Auch, M von Jan, HP Klenk, M Göker Standards in Genomic Sciences 2 (1), 117, 2010 | 1531 | 2010 |
| Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA HN Poinar, C Schwarz, J Qi, B Shapiro, RDE MacPhee, B Buigues, ... science 311 (5759), 392, 2006 | 767 | 2006 |
| Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs AF Auch, HP Klenk, M Göker Standards in genomic sciences 2 (1), 142, 2010 | 582 | 2010 |
| MetaSim: A Sequencing Simulator for Genomics and Metagenomics DC Richter, F Ott, AF Auch, R Schmid, DH Huson Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary …, 2011 | 532 | 2011 |
| MetaSim—A sequencing simulator for genomics and metagenomics DC Richter, F Ott, AF Auch, R Schmid, DH Huson PLoS One 3 (10), e3373, 2008 | 532 | 2008 |
| Whole-genome prokaryotic phylogeny SR Henz, DH Huson, AF Auch, K Nieselt-Struwe, SC Schuster Bioinformatics 21 (10), 2329-2335, 2005 | 275 | 2005 |
| Methods for comparative metagenomics D Huson, D Richter, S Mitra, A Auch, S Schuster BMC bioinformatics 10 (Suppl 1), S12, 2009 | 188 | 2009 |
| COPYCAT: cophylogenetic analysis tool JP Meier-Kolthoff, AF Auch, DH Huson, M Göker Bioinformatics 23 (7), 898-900, 2007 | 125 | 2007 |
| Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences A Auch, S Henz, B Holland, M Göker BMC bioinformatics 7 (1), 350, 2006 | 102 | 2006 |
| Highly parallelized inference of large genome‐based phylogenies JP Meier‐Kolthoff, AF Auch, HP Klenk, M Göker Concurrency and Computation: Practice and Experience, 2013 | 59 | 2013 |
| AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa A Stamatakis, A Auch, J Meier-Kolthoff, M Göker BMC bioinformatics 8 (1), 405, 2007 | 57 | 2007 |
| A clustering optimization strategy for molecular taxonomy applied to planktonic foraminifera SSU rDNA M Göker, GW Grimm, AF Auch, R Aurahs, M Kučera Evolutionary bioinformatics online 6, 97, 2010 | 35 | 2010 |
| GBDP on the grid: a genome-based approach for species delimitation adjusted for an automated and highly parallel processing of large data sets JP Meier-Kolthoff, AF Auch, HP Klenk, M Göker Hochleistungsrechnen in Baden-Wuerttemberg-Ausgewaehlte Aktivitaeten im …, 2014 | 11 | 2014 |
| Metagenome analysis using MEGAN DH Huson, AF Auch, J Qi, SC Schuster Proceedings of the 5th Asia-Pacific Bioinformatics Conference 5, 7-16, 2007 | 5 | 2007 |
| Large-Scale Co-Phylogenetic Analysis on the Grid H Stockinger, AF Auch, M Göker, J Meier-Kolthoff, A Stamatakis Int J Grid High Perform Comput 1, 39-54, 2009 | 4 | 2009 |
| Phylogenies from whole genomes: Methodological update within a distance-based framework AF Auch, SR Henz, M Göker German Conference on Bioinformatics, 2006 | 4 | 2006 |
| A phylogenetic potpourri: computational methods for analysing genome-scale data AF Auch Universitätsbibliothek Tübingen, 2010 | 2 | 2010 |
