The technology and biology of single-cell RNA sequencing AA Kolodziejczyk, JK Kim, V Svensson, JC Marioni, SA Teichmann Molecular cell 58 (4), 610-620, 2015 | 1293 | 2015 |
Exponential scaling of single-cell RNA-seq in the past decade V Svensson, R Vento-Tormo, SA Teichmann Nature protocols 13 (4), 599-604, 2018 | 911 | 2018 |
Power Analysis of Single Cell RNA‐Sequencing Experiments V Svensson, KN Natarajan, LH Ly, RJ Miragaia, C Labalette, IC Macaulay, ... Nature Methods 14 (4), 381-387, 2017 | 595 | 2017 |
SpatialDE: identification of spatially variable genes V Svensson, SA Teichmann, O Stegle Nature Methods 15 (5), 343, 2018 | 431 | 2018 |
Droplet scRNA-seq is not zero-inflated V Svensson Nature Biotechnology 38 (2), 147-150, 2020 | 317 | 2020 |
A Python library for probabilistic analysis of single-cell omics data A Gayoso, R Lopez, G Xing, P Boyeau, V Valiollah Pour Amiri, J Hong, ... Nature biotechnology 40 (2), 163-166, 2022 | 288 | 2022 |
Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria T Lönnberg, V Svensson, KR James, D Fernandez-Ruiz, I Sebina, ... Science immunology 2 (9), eaal2192, 2017 | 285 | 2017 |
A multimodal cell census and atlas of the mammalian primary motor cortex Principal manuscript editors, Analysis coordination, ... Nature 598 (7879), 86-102, 2021 | 276 | 2021 |
Single-cell RNA-sequencing reveals a continuous spectrum of differentiation in hematopoietic cells IC Macaulay, V Svensson, C Labalette, L Ferreira, F Hamey, T Voet, ... Cell reports 14 (4), 966-977, 2016 | 206 | 2016 |
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ... Nature 598 (7879), 103-110, 2021 | 203 | 2021 |
MERVL/Zscan4 network activation results in transient genome-wide DNA demethylation of mESCs MA Eckersley-Maslin, V Svensson, C Krueger, TM Stubbs, P Giehr, ... Cell Reports 17 (1), 179-192, 2016 | 193 | 2016 |
A curated database reveals trends in single-cell transcriptomics V Svensson, E da Veiga Beltrame, L Pachter Database 2020, baaa073, 2020 | 187 | 2020 |
Interpretable factor models of single-cell RNA-seq via variational autoencoders V Svensson, A Gayoso, N Yosef, L Pachter Bioinformatics 36 (11), 3418-3421, 2020 | 151 | 2020 |
Computational approaches for interpreting sc RNA‐seq data R Rostom, V Svensson, SA Teichmann, G Kar FEBS letters 591 (15), 2213-2225, 2017 | 122 | 2017 |
An atlas of mouse CD4+ T cell transcriptomes MJT Stubbington, B Mahata, V Svensson, A Deonarine, JK Nissen, ... Biology direct 10, 1-25, 2015 | 101 | 2015 |
Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition M Oatley, ÖV Bölükbası, V Svensson, M Shvartsman, K Ganter, K Zirngibl, ... Nature communications 11 (1), 586, 2020 | 78 | 2020 |
Single-cell analysis at the threshold X Chen, JC Love, NE Navin, L Pachter, MJT Stubbington, V Svensson, ... Nature biotechnology 34 (11), 1111-1118, 2016 | 73 | 2016 |
Protein velocity and acceleration from single-cell multiomics experiments G Gorin, V Svensson, L Pachter Genome biology 21, 1-6, 2020 | 70 | 2020 |
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation V Proserpio, A Piccolo, L Haim-Vilmovsky, G Kar, T Lönnberg, ... Genome biology 17, 1-15, 2016 | 68 | 2016 |
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types Z Yao, H Liu, F Xie, S Fischer, AS Booeshaghi, RS Adkins, AI Aldridge, ... Biorxiv, 2020.02. 29.970558, 2020 | 63 | 2020 |