| Cross genome comparisons of serine proteases in Arabidopsis and rice LP Tripathi, R Sowdhamini BMC genomics 7, 1-31, 2006 | 168 | 2006 |
| TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery YA Chen, LP Tripathi, K Mizuguchi PloS one 6 (3), e17844, 2011 | 134 | 2011 |
| Network analysis and in silico prediction of protein–protein interactions with applications in drug discovery Y Murakami, LP Tripathi, P Prathipati, K Mizuguchi Current opinion in structural biology 44, 134-142, 2017 | 93 | 2017 |
| Genome-wide survey of prokaryotic serine proteases: analysis of distribution and domain architectures of five serine protease families in prokaryotes LP Tripathi, R Sowdhamini BMC genomics 9, 1-28, 2008 | 87 | 2008 |
| Inhibitory roles of signal transducer and activator of transcription 3 in antitumor immunity during carcinogen-induced lung tumorigenesis S Ihara, H Kida, H Arase, LP Tripathi, YA Chen, T Kimura, M Yoshida, ... Cancer research 72 (12), 2990-2999, 2012 | 64 | 2012 |
| Network based analysis of hepatitis C virus core and NS4B protein interactions LP Tripathi, C Kataoka, S Taguwa, K Moriishi, Y Mori, Y Matsuura, ... Molecular bioSystems 6 (12), 2539-2553, 2010 | 56 | 2010 |
| Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families PK Shah, LP Tripathi, LJ Jensen, M Gahnim, C Mason, EE Furlong, ... Gene 407 (1-2), 199-215, 2008 | 46 | 2008 |
| Double deletion of tetraspanins CD9 and CD81 in mice leads to a syndrome resembling accelerated aging Y Jin, Y Takeda, Y Kondo, LP Tripathi, S Kang, H Takeshita, H Kuhara, ... Scientific Reports 8 (1), 5145, 2018 | 42 | 2018 |
| An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework YA Chen, LP Tripathi, K Mizuguchi Database 2016, baw009, 2016 | 37 | 2016 |
| Understanding the biological context of NS5A–host interactions in HCV infection: a network-based approach LP Tripathi, H Kambara, YA Chen, Y Nishimura, K Moriishi, T Okamoto, ... Journal of proteome research 12 (6), 2537-2551, 2013 | 36 | 2013 |
| Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment K Shameer, LP Tripathi, KR Kalari, JT Dudley, R Sowdhamini Briefings in bioinformatics 17 (5), 841-862, 2016 | 32 | 2016 |
| Integrated pathway clusters with coherent biological themes for target prioritisation YA Chen, LP Tripathi, BH Dessailly, J Nystroem-Persson, S Ahmad, ... PloS one 9 (6), e99030, 2014 | 26 | 2014 |
| Deep learning prediction of adverse drug reactions in drug discovery using open TG–GATEs and FAERS databases A Mohsen, LP Tripathi, K Mizuguchi Frontiers in Drug Discovery 1, 768792, 2021 | 22 | 2021 |
| The TargetMine data warehouse: enhancement and updates YA Chen, LP Tripathi, T Fujiwara, T Kameyama, MN Itoh, K Mizuguchi Frontiers in genetics 10, 934, 2019 | 21 | 2019 |
| Classification of idiopathic interstitial pneumonias using anti–myxovirus resistance-protein 1 autoantibody Y Hamano, H Kida, S Ihara, A Murakami, M Yanagawa, K Ueda, O Honda, ... Scientific Reports 7 (1), 43201, 2017 | 17 | 2017 |
| Proteomic analysis of hepatitis C virus (HCV) core protein transfection and host regulator PA28γ knockout in HCV pathogenesis: a network-based study LP Tripathi, H Kambara, K Moriishi, E Morita, T Abe, Y Mori, YA Chen, ... Journal of proteome research 11 (7), 3664-3679, 2012 | 17 | 2012 |
| Prediction and experimental validation of a putative non-consensus binding site for transcription factor STAT3 in serum amyloid A gene promoter P Tiwari, LP Tripathi, T Nishikawa-Matsumura, S Ahmad, SNJ Song, ... Biochimica et Biophysica Acta (BBA)-General Subjects 1830 (6), 3650-3655, 2013 | 16 | 2013 |
| Integrating sequence and gene expression information predicts genome-wide DNA-binding proteins and suggests a cooperative mechanism S Ahmad, P Prathipati, LP Tripathi, YA Chen, A Arya, Y Murakami, ... Nucleic Acids Research 46 (1), 54-70, 2018 | 11 | 2018 |
| Flavivirus recruits the valosin-containing protein–NPL4 complex to induce stress granule disassembly for efficient viral genome replication M Arakawa, K Tabata, K Ishida, M Kobayashi, A Arai, T Ishikawa, ... Journal of Biological Chemistry 298 (3), 2022 | 10 | 2022 |
| Host-pathogen protein-nucleic acid interactions: A comprehensive review A Jain, S Mittal, LP Tripathi, R Nussinov, S Ahmad Computational and Structural Biotechnology Journal 20, 4415-4436, 2022 | 10 | 2022 |
