Tracing the enterococci from Paleozoic origins to the hospital F Lebreton, AL Manson, JT Saavedra, TJ Straub, AM Earl, MS Gilmore Cell 169 (5), 849-861. e13, 2017 | 260 | 2017 |
Computational methods for strain-level microbial detection in colony and metagenome sequencing data C Anyansi, TJ Straub, AL Manson, AM Earl, T Abeel Frontiers in Microbiology 11, 538426, 2020 | 94 | 2020 |
Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women CJ Worby, HL Schreiber IV, TJ Straub, LR van Dijk, RA Bronson, ... Nature microbiology 7 (5), 630-639, 2022 | 79 | 2022 |
Probing Plasmodium falciparum sexual commitment at the single-cell level NMB Brancucci, M De Niz, TJ Straub, D Ravel, L Sollelis, BW Birren, ... Wellcome Open Research 3, 2018 | 56 | 2018 |
Horizontal Gene Acquisitions, Mobile Element Proliferation, and Genome Decay in the Host-Restricted Plant Pathogen Erwinia Tracheiphila LR Shapiro, ED Scully, TJ Straub, J Park, AG Stephenson, GA Beattie, ... Genome biology and evolution 8 (3), 649-664, 2016 | 46 | 2016 |
Chicken meat-associated enterococci: influence of agricultural antibiotic use and connection to the clinic AL Manson, D Van Tyne, TJ Straub, S Clock, M Crupain, U Rangan, ... Applied and environmental microbiology 85 (22), e01559-19, 2019 | 45 | 2019 |
StrainGE: A toolkit to track and characterize low-abundance strains in complex microbial communities LR van Dijk, BJ Walker, TJ Straub, CJ Worby, A Grote, HL Schreiber, ... Genome Biology 23 (1), 1-27, 2022 | 42 | 2022 |
QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data C Anyansi, A Keo, BJ Walker, TJ Straub, AL Manson, AM Earl, T Abeel BMC genomics 21, 1-16, 2020 | 32 | 2020 |
SER-109: An Oral Investigational Microbiome Therapeutic for Patients with Recurrent Clostridioides difficile Infection (rCDI) S Khanna, M Sims, TJ Louie, M Fischer, K LaPlante, J Allegretti, ... Antibiotics 11 (9), 1234, 2022 | 26 | 2022 |
Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: a malaria case study E LaVerriere, P Schwabl, M Carrasquilla, AR Taylor, ZM Johnson, ... Molecular ecology resources 22 (6), 2285-2303, 2022 | 26 | 2022 |
Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections TJ Straub, WC Chou, AL Manson, HL Schreiber, BJ Walker, ... BMC microbiology 21 (1), 1-17, 2021 | 24 | 2021 |
The Anopheles coluzzii microbiome and its interaction with the intracellular parasite Wolbachia TJ Straub, WR Shaw, P Marcenac, SP Sawadogo, RK Dabiré, A Diabaté, ... Scientific Reports 10 (1), 13847, 2020 | 20 | 2020 |
Draft genome sequence of Erwinia tracheiphila, an economically important bacterial pathogen of cucurbits LR Shapiro, ED Scully, D Roberts, TJ Straub, SM Geib, J Park, ... Genome Announcements 3 (3), 10.1128/genomea. 00482-15, 2015 | 20 | 2015 |
Genomic insights into temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20 to 79 °C SMJ Pollo, AA Adebusuyi, TJ Straub, JM Foght, O Zhaxybayeva, ... Extremophiles 21, 963-979, 2017 | 10 | 2017 |
A null model for microbial diversification TJ Straub, O Zhaxybayeva Proceedings of the National Academy of Sciences 114 (27), E5414-E5423, 2017 | 10 | 2017 |
Direct O-glycosidation of resin bound thioglycosides SH Nguyen, AH Trotta, J Cao, TJ Straub, CS Bennett Organic & Biomolecular Chemistry 10 (12), 2373-2376, 2012 | 10 | 2012 |
Influence of agricultural antibiotic use on chicken meat-associated enterococci and their connection to the clinic AL Manson, D Van Tyne, TJ Straub, S Clock, M Crupain, U Rangan, ... Applied and Environmental Microbiology, AEM. 01559-19, 2019 | 7 | 2019 |
Gut-bladder axis syndrome associated with recurrent UTIs in humans CJ Worby, HL Schreiber IV, TJ Straub, LR van Dijk, RA Bronson, B Olson, ... medRxiv, 2021.11. 15.21266268, 2021 | 4 | 2021 |
LB15. SER-109, an Investigational Microbiome Therapeutic, Reduces Abundance of Antimicrobial Resistance Genes in Patients with Recurrent Clostridioides difficile Infection … TJ Straub, L Diao, C Ford, M Sims, TJ Louie, C Berenson, CS Kraft, ... Open Forum Infectious Diseases 8 (Supplement_1), S812-S813, 2021 | 2 | 2021 |
Impact of a Purified Microbiome Therapeutic on Abundance of Antimicrobial Resistance Genes in Patients With Recurrent Clostridioides difficile Infection TJ Straub, MJ Lombardo, JA Bryant, L Diao, TP Lodise, DE Freedberg, ... Clinical Infectious Diseases 78 (4), 833-841, 2024 | 1 | 2024 |