| MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles M Tiberti, T Terkelsen, K Degn, L Beltrame, TC Cremers, I da Piedade, ... Briefings in bioinformatics 23 (3), bbac074, 2022 | 46 | 2022 |
| RosettaDDGPrediction for high‐throughput mutational scans: From stability to binding V Sora, AO Laspiur, K Degn, M Arnaudi, M Utichi, L Beltrame, ... Protein Science 32 (1), e4527, 2023 | 30 | 2023 |
| Cancer-related Mutations with Local or Long-range Effects on an Allosteric Loop of p53 K Degn, L Beltrame, FD Hede, V Sora, V Nicolaci, M Vabistsevits, ... Journal of Molecular Biology 434 (17), 167663, 2022 | 19 | 2022 |
| T cell receptor sequence clustering and antigen specificity M Vujovic, KF Degn, FI Marin, AL Schaap-Johansen, B Chain, ... Computational and Structural Biotechnology Journal 18, 2166-2173, 2020 | 18 | 2020 |
| Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks M Nourbakhsh, K Degn, A Saksager, M Tiberti, E Papaleo Briefings in Bioinformatics 25 (2), bbad519, 2024 | 8 | 2024 |
| TRAP1 S-nitrosylation as a model of population-shift mechanism to study the effects of nitric oxide on redox-sensitive oncoproteins E Papaleo, M Tiberti, M Arnaudi, C Pecorari, F Faienza, L Cantwell, ... Cell Death & Disease 14 (4), 284, 2023 | 8 | 2023 |
| MAVISp: Multi-layered Assessment of VarIants by Structure for proteins M Arnaudi, L Beltrame, K Degn, M Utichi, P Sánchez-Izquierdo, S Scrima, ... bioRxiv, 2022.10. 22.513328, 2022 | 5 | 2022 |
| PDBminer to Find and Annotate Protein Structures for Computational Analysis K Degn, L Beltrame, M Tiberti, E Papaleo Journal of chemical information and modeling 63 (23), 7274–7281, 2023 | 3 | 2023 |
| MAVISp: A Modular Structure-Based Framework for Genomic Variant Interpretation M Arnaudi, L Beltrame, K Degn, M Utichi, S Scrima, PS Besora, ... | 3 | 2022 |
| Classification and annotations of cancer variants using structure-based methods K Degn DTU Health Technology, 2024 | | 2024 |
| S-nitrosylation under the lens of molecular dynamics E Papaleo, M Tiberti, M Arnaudi, C Pecorari, F Faienza, L Cantwell, ... European Biophysics Journal With Biophysics Letters 52 (Suppl. 1), S50-S50, 2023 | | 2023 |
