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Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 MA Suchard, P Lemey, G Baele, DL Ayres, AJ Drummond, A Rambaut Virus evolution 4 (1), vey016, 2018 | 2964 | 2018 |
Considerable escape of SARS-CoV-2 Omicron to antibody neutralization D Planas, N Saunders, P Maes, F Guivel-Benhassine, C Planchais, ... Nature 602 (7898), 671-675, 2022 | 1443 | 2022 |
The genome of Tetranychus urticae reveals herbivorous pest adaptations M Grbić, T Van Leeuwen, RM Clark, S Rombauts, P Rouzé, V Grbić, ... Nature 479 (7374), 487-492, 2011 | 1169 | 2011 |
Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty G Baele, P Lemey, T Bedford, A Rambaut, MA Suchard, AV Alekseyenko Molecular Biology and Evolution 29 (9), 2157-2167, 2012 | 1133 | 2012 |
The early spread and epidemic ignition of HIV-1 in human populations NR Faria, A Rambaut, MA Suchard, G Baele, T Bedford, MJ Ward, ... Science 346 (6205), 56-61, 2014 | 987 | 2014 |
Domestication and divergence of Saccharomyces cerevisiae beer yeasts B Gallone, J Steensels, T Prahl, L Soriaga, V Saels, B Herrera-Malaver, ... Cell 166 (6), 1397-1410. e16, 2016 | 679 | 2016 |
Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics G Baele, WLS Li, AJ Drummond, MA Suchard, P Lemey Molecular Biology and Evolution 30 (2), 239-243, 2012 | 621 | 2012 |
Virus genomes reveal factors that spread and sustained the Ebola epidemic G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ... Nature 544 (7650), 309-315, 2017 | 448 | 2017 |
SpreaD3: interactive visualization of spatiotemporal history and trait evolutionary processes F Bielejec, G Baele, B Vrancken, MA Suchard, A Rambaut, P Lemey Molecular biology and evolution 33 (8), 2167-2169, 2016 | 441 | 2016 |
Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary K Vanneste, G Baele, S Maere, Y Van de Peer Genome Research 24 (8), 1334-1347, 2014 | 425 | 2014 |
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2 P Lemey, A Rambaut, T Bedford, N Faria, F Bielejec, G Baele, CA Russell, ... PLoS Pathogens 10 (2), e1003932, 2014 | 411 | 2014 |
Temporal signal and the phylodynamic threshold of SARS-CoV-2 S Duchene, L Featherstone, M Haritopoulou-Sinanidou, A Rambaut, ... Virus evolution 6 (2), veaa061, 2020 | 401 | 2020 |
Genomic and epidemiological monitoring of yellow fever virus transmission potential NR Faria, MUG Kraemer, S Hill, JG de Jesus, RS de Aguiar, FCM Iani, ... Science 31 (361), 894-899, 2018 | 304 | 2018 |
Serum neutralization of SARS-CoV-2 Omicron sublineages BA. 1 and BA. 2 in patients receiving monoclonal antibodies T Bruel, J Hadjadj, P Maes, D Planas, A Seve, I Staropoli, ... Nature medicine 28 (6), 1297-1302, 2022 | 266 | 2022 |
Global disparities in SARS-CoV-2 genomic surveillance AF Brito, E Semenova, G Dudas, GW Hassler, CC Kalinich, MUG Kraemer, ... Nature communications 13 (1), 7003, 2022 | 211 | 2022 |
BEAGLE 3: improved performance, scaling, and usability for a high-performance computing library for statistical phylogenetics DL Ayres, MP Cummings, G Baele, AE Darling, PO Lewis, DL Swofford, ... Systematic biology 68 (6), 1052-1061, 2019 | 175 | 2019 |
Untangling introductions and persistence in COVID-19 resurgence in Europe P Lemey, N Ruktanonchai, SL Hong, V Colizza, C Poletto, ... Nature 595 (7869), 713-717, 2021 | 160* | 2021 |
Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2 P Lemey, SL Hong, V Hill, G Baele, C Poletto, V Colizza, Á O’toole, ... Nature communications 11 (1), 5110, 2020 | 155* | 2020 |
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