Assessing genome assembly quality using the LTR Assembly Index (LAI) S Ou, J Chen, N Jiang Nucleic acids research 46 (21), e126-e126, 2018 | 498 | 2018 |
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication M Wang, Y Yu, G Haberer, PR Marri, C Fan, JL Goicoechea, A Zuccolo, ... Nature genetics 46 (9), 982, 2014 | 397 | 2014 |
Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport J Qi, Q Qian, Q Bu, S Li, Q Chen, J Sun, W Liang, Y Zhou, C Chu, X Li, ... Plant physiology 147 (4), 1947-1959, 2008 | 301 | 2008 |
Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution J Chen, Q Huang, D Gao, J Wang, Y Lang, T Liu, B Li, Z Bai, ... Nature communications 4, 1595, 2013 | 202 | 2013 |
Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation F Li, W Liu, J Tang, J Chen, H Tong, B Hu, C Li, J Fang, M Chen, C Chu Cell research 20 (7), 838, 2010 | 201 | 2010 |
Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set JSS Ammiraju, F Lu, A Sanyal, Y Yu, X Song, N Jiang, AC Pontaroli, ... The Plant Cell 20 (12), 3191-3209, 2008 | 143 | 2008 |
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes F Lu, JSS Ammiraju, A Sanyal, S Zhang, R Song, J Chen, G Li, Y Sui, ... Proceedings of the National Academy of Sciences 106 (6), 2071-2076, 2009 | 140 | 2009 |
A snapshot of the emerging tomato genome sequence LA Mueller, RK Lankhorst, SD Tanksley, JJ Giovannoni, R White, ... The Plant Genome 2 (1), 78-92, 2009 | 105 | 2009 |
BAK1 is not a target of the Pseudomonas syringae effector AvrPto T Xiang, N Zong, J Zhang, J Chen, M Chen, JM Zhou Molecular plant-microbe interactions 24 (1), 100-107, 2011 | 102 | 2011 |
Population genetics of foxtail millet and its wild ancestor C Wang, J Chen, H Zhi, L Yang, W Li, Y Wang, H Li, B Zhao, M Chen, ... BMC genetics 11 (1), 90, 2010 | 64 | 2010 |
A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes D Gao, J Chen, M Chen, BC Meyers, S Jackson PloS one 7 (2), e32010, 2012 | 63 | 2012 |
A graph-based genome and pan-genome variation of the model plant Setaria Q He, S Tang, H Zhi, J Chen, J Zhang, H Liang, O Alam, H Li, H Zhang, ... Nature Genetics, 1-11, 2023 | 51 | 2023 |
Serial single-cell genomics reveals convergent subclonal evolution of resistance as patients with early-stage breast cancer progress on endocrine plus CDK4/6 therapy JI Griffiths, J Chen, PA Cosgrove, A O’Dea, P Sharma, C Ma, M Trivedi, ... Nature cancer 2 (6), 658-671, 2021 | 46 | 2021 |
The impact and origin of copy number variations in the Oryza species Z Bai, J Chen, Y Liao, M Wang, R Liu, S Ge, RA Wing, M Chen BMC genomics 17 (1), 261, 2016 | 44 | 2016 |
Tracking the genome-wide outcomes of a transposable element burst over decades of amplification L Lu, J Chen, SMC Robb, Y Okumoto, JE Stajich, SR Wessler Proceedings of the National Academy of Sciences 114 (49), E10550-E10559, 2017 | 43 | 2017 |
A lncRNA fine-tunes salicylic acid biosynthesis to balance plant immunity and growth N Liu, Y Xu, Q Li, Y Cao, D Yang, S Liu, X Wang, Y Mi, Y Liu, C Ding, ... Cell Host & Microbe 30 (8), 1124-1138. e8, 2022 | 41 | 2022 |
Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice J Chen, L Lu, J Benjamin, S Diaz, CN Hancock, JE Stajich, SR Wessler Nature communications 10 (1), 641, 2019 | 39 | 2019 |
PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq Y Gao, H Wang, H Zhang, Y Wang, J Chen, L Gu Bioinformatics 34 (9), 1580-1582, 2018 | 36 | 2018 |
Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum A Sanyal, JSS Ammiraju, F Lu, Y Yu, T Rambo, J Currie, K Kollura, ... Molecular biology and evolution 27 (11), 2487-2506, 2010 | 36 | 2010 |
RelocaTE2: a high resolution transposable element insertion site mapping tool for population resequencing J Chen, TR Wrightsman, SR Wessler, JE Stajich PeerJ 5, e2942, 2017 | 33 | 2017 |