Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli K Imamura, N Imamachi, G Akizuki, M Kumakura, A Kawaguchi, K Nagata, ... Molecular cell 53 (3), 393-406, 2014 | 693 | 2014 |
Visualization of nonengineered single mRNAs in living cells using genetically encoded fluorescent probes T Yamada, H Yoshimura, A Inaguma, T Ozawa Analytical chemistry 83 (14), 5708-5714, 2011 | 83 | 2011 |
Fluorescent probes for imaging endogenous β-actin mRNA in living cells using fluorescent protein-tagged pumilio H Yoshimura, A Inaguma, T Yamada, T Ozawa ACS chemical biology 7 (6), 999-1005, 2012 | 67 | 2012 |
Diminished nuclear RNA decay upon Salmonella infection upregulates antibacterial noncoding RNAs K Imamura, A Takaya, Y Ishida, Y Fukuoka, T Taya, R Nakaki, M Kakeda, ... The EMBO journal 37 (13), e97723, 2018 | 66 | 2018 |
Contributions of regulated transcription and mRNA decay to the dynamics of gene expression T Yamada, N Akimitsu Wiley Interdisciplinary Reviews: RNA 10 (1), e1508, 2019 | 39 | 2019 |
Ratiometric bioluminescence indicators for monitoring cyclic adenosine 3′, 5′-monophosphate in live cells based on luciferase-fragment complementation M Takeuchi, Y Nagaoka, T Yamada, H Takakura, T Ozawa Analytical chemistry 82 (22), 9306-9313, 2010 | 35 | 2010 |
Spatiotemporal analysis with a genetically encoded fluorescent RNA probe reveals TERRA function around telomeres T Yamada, H Yoshimura, R Shimada, M Hattori, M Eguchi, TK Fujiwara, ... Scientific Reports 6 (1), 38910, 2016 | 31 | 2016 |
Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates K Kawata, H Wakida, T Yamada, K Taniue, H Han, M Seki, Y Suzuki, ... Genome Research 30 (10), 1481-1491, 2020 | 27 | 2020 |
Development of red-shifted mutants derived from luciferase of Brazilian click beetle Pyrearinus termitilluminans T Nishiguchi, T Yamada, Y Nasu, M Ito, H Yoshimura, T Ozawa Journal of biomedical optics 20 (10), 101205-101205, 2015 | 26 | 2015 |
Systematic analysis of targets of pumilio-mediated mRNA decay reveals that PUM1 repression by DNA damage activates translesion synthesis T Yamada, N Imamachi, K Imamura, K Taniue, T Kawamura, Y Suzuki, ... Cell Reports 31 (5), 2020 | 23 | 2020 |
Harnessing synthetic biology to engineer organoids and tissues C Trentesaux, T Yamada, OD Klein, WA Lim Cell Stem Cell 30 (1), 10-19, 2023 | 19 | 2023 |
5′-Bromouridine IP Chase (BRIC)-Seq to Determine RNA Half-Lives T Yamada, N Imamachi, R Onoguchi-Mizutani, K Imamura, Y Suzuki, ... Methods in Molecular Biology 1720, 1-13, 2018 | 15 | 2018 |
Interplay between transcription and RNA degradation T Yamada, M Nagahama, N Akimitsu Gene Expression and Regulation in Mammalian Cells—Transcription From …, 2018 | 10 | 2018 |
SINGLE-MOLECULE LIVE-CELL IMAGING OF A NON-CODING RNA H Yoshimura, T Yamada, R Shimada, T Ozawa Chem. Biol 7, 999-1005, 2012 | 7 | 2012 |
Techniques for analyzing genome-wide expression of non-coding RNA R Onoguchi-Mizutani, K Taniue, K Kawata, T Yamada, N Akimitsu Handbook of Epigenetics, 163-184, 2023 | 1 | 2023 |
Systematic analysis of targets of Pumilio (PUM)-mediated mRNA decay identifies a role of PUM1 in regulating DNA damage response pathway T Yamada, N Imamachi, K Imamura, T Kawamura, Y Suzuki, ... bioRxiv, 387381, 2018 | 1 | 2018 |
Techniques for Genome-Wide Expression Analysis of Noncoding RNA NA Rena Mizutani, Toshimichi Yamada Handbook of Epigenetics (Second Edition) 11, 153-165, 2017 | 1* | 2017 |
Repression of PUM1-mediated mRNA decay activates translesion synthesis after DNA damage T Yamada, X Sun, N Akimitsu Molecular & Cellular Oncology 7 (6), 1812868, 2020 | | 2020 |
Metabolic labeling of RNA using multiple ribonucleoside analogs enables simultaneous evaluation of transcription and degradation rates K Kawata, H Wakida, T Yamada, K Taniue, H Han, M Seki, Y Suzuki, ... bioRxiv, 2020.03. 06.980250, 2020 | | 2020 |
Identifying functional targets reveals that inhibition of Pumilio-mediated mRNA decay increases cell resistance to DNA damage. T Yamada, N Akimitsu, M Nagahama MOLECULAR BIOLOGY OF THE CELL 29 (26), 283-284, 2018 | | 2018 |