| Protein abundance control by non-coding antisense transcription F Huber, D Bunina, I Gupta, A Khmelinskii, M Meurer, P Theer, ... Cell reports 15 (12), 2625-2636, 2016 | 62 | 2016 |
| Genomic rewiring of SOX2 chromatin interaction network during differentiation of ESCs to postmitotic neurons D Bunina, N Abazova, N Diaz, KM Noh, J Krijgsveld, JB Zaugg Cell systems 10 (6), 480-494. e8, 2020 | 41 | 2020 |
| Lysine 4 of histone H3. 3 is required for embryonic stem cell differentiation, histone enrichment at regulatory regions and transcription accuracy M Gehre, D Bunina, S Sidoli, MJ Lübke, N Diaz, M Trovato, BA Garcia, ... Nature genetics 52 (3), 273-282, 2020 | 40 | 2020 |
| GRaNIE and GRaNPA: inference and evaluation of enhancer‐mediated gene regulatory networks A Kamal, C Arnold, A Claringbould, R Moussa, NH Servaas, M Kholmatov, ... Molecular Systems Biology 19 (6), e11627, 2023 | 36 | 2023 |
| PCR duplication: A one-step cloning-free method to generate duplicated chromosomal loci and interference-free expression reporters in yeast F Huber, M Meurer, D Bunina, I Kats, CI Maeder, M Štefl, C Mongis, ... PLoS One 9 (12), e114590, 2014 | 19 | 2014 |
| GRaNIE and GRaNPA: Inference and evaluation of enhancer-mediated gene regulatory networks applied to study macrophages A Kamal, C Arnold, A Claringbould, R Moussa, NH Servaas, M Kholmatov, ... BioRxiv, 2021.12. 18.473290, 2021 | 12 | 2021 |
| The inactivation of the π gene in chicken erythroblasts of adult lineage is not mediated by packaging of the embryonic part of the α-globin gene domain into a repressive … ES Ioudinkova, SV Ulianov, D Bunina, OV Iarovaia, AA Gavrilov, SV Razin Epigenetics 6 (12), 1481-1488, 2011 | 9 | 2011 |
| Donor cell memory confers a metastable state of directly converted cells KP Kim, C Li, D Bunina, HW Jeong, J Ghelman, J Yoon, B Shin, H Park, ... Cell Stem Cell 28 (7), 1291-1306. e10, 2021 | 8 | 2021 |
| Glycolysis–Wnt signaling axis tunes developmental timing of embryo segmentation H Miyazawa, J Rada, PGL Sanchez, E Esposito, D Bunina, C Girardot, ... bioRxiv, 2024.01. 22.576629, 2024 | 7 | 2024 |
| Upregulation of SPS100 gene expression by an antisense RNA via a switch of mRNA isoforms with different stabilities D Bunina, M Štefl, F Huber, A Khmelinskii, M Meurer, JD Barry, I Kats, ... Nucleic Acids Research 45 (19), 11144-11158, 2017 | 6 | 2017 |
| Enhancer-priming in ageing human bone marrow mesenchymal stromal cells contributes to immune traits MC Lai, M Ruiz-Velasco, C Arnold, O Sigalova, D Bunina, I Berest, X Ding, ... BioRxiv, 2021.09. 03.458728, 2021 | 5 | 2021 |
| Protein abundance control by noncoding antisense transcription. Cell Rep 15: 2625–2636 F Huber, D Bunina, I Gupta, A Khmelinskii, M Meurer, P Theer, ... | 5 | 2016 |
| Chromatin structure of the joint α/β-globin gene locus of Danio rerio. E Ioudinkova, N Petrova, D Bunina, H Vishniakova, I Sklyar, S Razin, ... Doklady Biochemistry & Biophysics 448 (1), 2013 | 1 | 2013 |
| Histone H3. 3 lysine 9 and 27 control repressive chromatin at cryptic enhancers and bivalent promoters M Trovato, D Bunina, U Yildiz, N Fernandez-Novel Marx, M Uckelmann, ... Nature Communications 15 (1), 7557, 2024 | | 2024 |
| Pathological LSD1 mutations repress enhancer-mediated gene regulatory networks in early differentiation D Bunina, PL Germain, A Lopez Tobon, N Fernandez-Novel Marx, ... bioRxiv, 2021.08. 11.455900, 2021 | | 2021 |
| Systematic Functional Analysis of the Influence of Antisense Transctiption on Protein Abundance in Yeast S. Cerevisiae D Bunina Ruperto-Carola University of Heidelberg, 2016 | | 2016 |
| The impact of antisense transcription on protein abundance in yeast D Bunina, F Huber, I Gupta, A Khmelinskii, M Meurer, C Mongis, J Barry, ... FEBS JOURNAL 282, 37-37, 2015 | | 2015 |
| Patterns of histone modifications across the chicken alfa-globin genes’ domain ES Yudinkova, DA Bunina, SV Ulyanov, AA Gavrilov, SV Razin Molecular Biology 45, 608-613, 2011 | | 2011 |
| Patterns of the histone modifications across the chicken alpha-globin genes domain ES Iudinkova, DA Bunina, SV Ul'ianov, AA Gavrilov, SV Razin Molekuliarnaia Biologiia 45 (4), 662-667, 2011 | | 2011 |
