Integrated genomic and proteomic analyses of a systematically perturbed metabolic network T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, ... Science 292 (5518), 929-934, 2001 | 2641 | 2001 |
Glycan foraging in vivo by an intestine-adapted bacterial symbiont JL Sonnenburg, J Xu, DD Leip, CH Chen, BP Westover, J Weatherford, ... Science 307 (5717), 1955-1959, 2005 | 1402 | 2005 |
Finding motifs using random projections J Buhler, M Tompa Proceedings of the fifth annual international conference on Computational …, 2001 | 814 | 2001 |
Efficient large-scale sequence comparison by locality-sensitive hashing J Buhler Bioinformatics 17 (5), 419-428, 2001 | 361 | 2001 |
The genomics education partnership: successful integration of research into laboratory classes at a diverse group of undergraduate institutions CD Shaffer, C Alvarez, C Bailey, D Barnard, S Bhalla, C Chandrasekaran, ... CBE—Life Sciences Education 9 (1), 55-69, 2010 | 257 | 2010 |
Method and apparatus for performing similarity searching on a data stream with respect to a query string JD Buhler, RD Chamberlain, MA Franklin, K Gyang, AC Jacob, ... US Patent 7,917,299, 2011 | 239 | 2011 |
Genomics education partnership D Lopatto, C Alvarez, D Barnard, C Chandrasekaran, HM Chung, C Du, ... Science 322 (5902), 684-685, 2008 | 207 | 2008 |
A course-based research experience: how benefits change with increased investment in instructional time CD Shaffer, CJ Alvarez, AE Bednarski, D Dunbar, AL Goodman, C Reinke, ... CBE—Life Sciences Education 13 (1), 111-130, 2014 | 195 | 2014 |
Designing seeds for similarity search in genomic DNA J Buhler, U Keich, Y Sun Proceedings of the seventh annual international conference on Research in …, 2003 | 191 | 2003 |
Dapple: improved techniques for finding spots on DNA microarrays J Buhler, T Ideker, D Haynor University of Washington CSE Technical Report UWTR 5, 2000 | 189 | 2000 |
Method and Apparatus for Protein Sequence Alignment using FPGA Devices R Chamberlain, J Buhler, A Jacob, J Lancaster, B Harris US Patent App. 11/836,947, 2008 | 138 | 2008 |
Designing multiple simultaneous seeds for DNA similarity search Y Sun, J Buhler Proceedings of the eighth annual international conference on Research in …, 2004 | 132 | 2004 |
Biosequence Similarity Search on the Mercury System P Krishnamurthy, J Buhler, R Chamberlain, M Franklin, K Gyang, A Jacob, ... The Journal of VLSI Signal Processing Systems for Signal, Image, and Video …, 2007 | 114 | 2007 |
Operon prediction without a training set BP Westover, JD Buhler, JL Sonnenburg, JI Gordon Bioinformatics 21 (7), 880-888, 2005 | 111 | 2005 |
Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution W Leung, CD Shaffer, LK Reed, ST Smith, W Barshop, W Dirkes, ... G3: Genes, Genomes, Genetics 5 (5), 719-740, 2015 | 107 | 2015 |
Mercury BLASTP: Accelerating protein sequence alignment A Jacob, J Lancaster, J Buhler, B Harris, RD Chamberlain ACM Transactions on Reconfigurable Technology and Systems (TRETS) 1 (2), 1-44, 2008 | 102 | 2008 |
A central support system can facilitate implementation and sustainability of a classroom-based undergraduate research experience (CURE) in genomics D Lopatto, C Hauser, CJ Jones, D Paetkau, V Chandrasekaran, D Dunbar, ... CBE—Life Sciences Education 13 (4), 711-723, 2014 | 91 | 2014 |
Method and apparatus for performing similarity searching JD Buhler, RD Chamberlain, MA Franklin, K Gyang, AC Jacob, ... US Patent 8,515,682, 2013 | 87 | 2013 |
FPGA-accelerated seed generation in Mercury BLASTP A Jacob, J Lancaster, J Buhler, RD Chamberlain 15th Annual IEEE Symposium on Field-Programmable Custom Computing Machines …, 2007 | 80 | 2007 |
Acceleration of ungapped extension in Mercury BLAST J Lancaster, J Buhler, RD Chamberlain Microprocessors and microsystems 33 (4), 281-289, 2009 | 74 | 2009 |