Very fast empirical prediction and rationalization of protein pKa values H Li, AD Robertson, JH Jensen Proteins: Structure, Function, and Bioinformatics 61 (4), 704-721, 2005 | 2265 | 2005 |
PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations TJ Dolinsky, P Czodrowski, H Li, JE Nielsen, JH Jensen, G Klebe, ... Nucleic acids research 35 (suppl_2), W522-W525, 2007 | 2012 | 2007 |
Energy decomposition analysis of covalent bonds and intermolecular interactions P Su, H Li The Journal of chemical physics 131 (1), 014102, 2009 | 1047 | 2009 |
Recent developments in the general atomic and molecular electronic structure system GMJ Barca, C Bertoni, L Carrington, D Datta, N De Silva, JE Deustua, ... The Journal of Chemical Physics 152 (15), 154102, 2020 | 950 | 2020 |
The effective fragment potential: a general method for predicting intermolecular interactions MS Gordon, L Slipchenko, H Li, JH Jensen Annual reports in computational chemistry 3, 177-193, 2007 | 266 | 2007 |
Improving the efficiency and convergence of geometry optimization with the polarizable continuum model: New energy gradients and molecular surface tessellation H Li, JH Jensen Journal of computational chemistry 25 (12), 1449-1462, 2004 | 183 | 2004 |
The polarizable continuum model (PCM) interfaced with the fragment molecular orbital method (FMO) DG Fedorov, K Kitaura, H Li, JH Jensen, MS Gordon Journal of computational chemistry 27 (8), 976-985, 2006 | 175 | 2006 |
Determinants of the relative reduction potentials of type-1 copper sites in proteins H Li, SP Webb, J Ivanic, JH Jensen Journal of the American Chemical Society 126 (25), 8010-8019, 2004 | 173 | 2004 |
Prediction and rationalization of protein p K a values using QM and QM/MM methods JH Jensen, H Li, AD Robertson, PA Molina The Journal of Physical Chemistry A 109 (30), 6634-6643, 2005 | 152 | 2005 |
Partial Hessian vibrational analysis: the localization of the molecular vibrational energy and entropy H Li, JH Jensen Theoretical Chemistry Accounts 107 (4), 211-219, 2002 | 141 | 2002 |
Nebraska Red: a phosphinate-based near-infrared fluorophore scaffold for chemical biology applications X Zhou, R Lai, JR Beck, H Li, CI Stains Chemical Communications 52 (83), 12290-12293, 2016 | 137 | 2016 |
Continuum solvation of large molecules described by QM/MM: a semi-iterative implementation of the PCM/EFP interface H Li, CS Pomelli, JH Jensen Theoretical Chemistry Accounts 109 (2), 71-84, 2003 | 113 | 2003 |
The prediction of protein p K a's using QM/MM: the p K a of lysine 55 in turkey ovomucoid third domain H Li, AW Hains, JE Everts, AD Robertson, JH Jensen The Journal of Physical Chemistry B 106 (13), 3486-3494, 2002 | 113 | 2002 |
The determinants of carboxyl pKa values in turkey ovomucoid third domain H Li, AD Robertson, JH Jensen Proteins: Structure, Function, and Bioinformatics 55 (3), 689-704, 2004 | 111 | 2004 |
Charge transfer interaction in the effective fragment potential method H Li, MS Gordon, JH Jensen The Journal of chemical physics 124 (21), 214108, 2006 | 108 | 2006 |
Continuous and smooth potential energy surface for conductorlike screening solvation model using fixed points with variable areas P Su, H Li The Journal of chemical physics 130 (7), 074109, 2009 | 95 | 2009 |
Excited state geometry of photoactive yellow protein chromophore: A combined conductorlike polarizable continuum model and time-dependent density functional study Y Wang, H Li The Journal of chemical physics 133 (3), 034108, 2010 | 75 | 2010 |
Energy gradients in combined fragment molecular orbital and polarizable continuum model (FMO/PCM) calculation H Li, DG Fedorov, T Nagata, K Kitaura, JH Jensen, MS Gordon Journal of computational chemistry 31 (4), 778-790, 2010 | 73 | 2010 |
Gradients of the polarization energy in the effective fragment potential method H Li, HM Netzloff, MS Gordon The Journal of chemical physics 125 (19), 194103, 2006 | 69 | 2006 |
Chemoselective Alteration of Fluorophore Scaffolds as a Strategy for the Development of Ratiometric Chemodosimeters X Zhou, L Lesiak, R Lai, JR Beck, J Zhao, CG Elowsky, H Li, CI Stains Angewandte Chemie International Edition 56 (15), 4197-4200, 2017 | 64 | 2017 |