A landscape of pharmacogenomic interactions in cancer F Iorio, TA Knijnenburg, DJ Vis, GR Bignell, MP Menden, M Schubert, ... Cell 166 (3), 740-754, 2016 | 1775 | 2016 |
Perturbation-response genes reveal signaling footprints in cancer gene expression M Schubert, B Klinger, M Klünemann, A Sieber, F Uhlitz, S Sauer, ... Nature communications 9 (1), 20, 2018 | 521 | 2018 |
BioModels: ten-year anniversary V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ... Nucleic acids research 43 (D1), D542-D548, 2015 | 320 | 2015 |
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 214 | 2020 |
Path2Models: large-scale generation of computational models from biochemical pathway maps F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ... BMC systems biology 7, 1-19, 2013 | 182 | 2013 |
cGAS–STING drives the IL-6-dependent survival of chromosomally instable cancers C Hong, M Schubert, AE Tijhuis, M Requesens, M Roorda, ... Nature 607 (7918), 366-373, 2022 | 168 | 2022 |
Genomic determinants of protein abundance variation in colorectal cancer cells TI Roumeliotis, SP Williams, E Gonçalves, C Alsinet, ... Cell reports 20 (9), 2201-2214, 2017 | 116 | 2017 |
Endogenous retroviral insertions drive non-canonical imprinting in extra-embryonic tissues CW Hanna, R Pérez-Palacios, L Gahurova, M Schubert, F Krueger, ... Genome biology 20, 1-17, 2019 | 70 | 2019 |
Peroxidase gene discovery from the horseradish transcriptome L Näätsaari, FW Krainer, M Schubert, A Glieder, GG Thallinger BMC genomics 15, 1-16, 2014 | 35 | 2014 |
Short-term molecular consequences of chromosome mis-segregation for genome stability L Garribba, G De Feudis, V Martis, M Galli, M Dumont, Y Eliezer, ... Nature Communications 14 (1), 1353, 2023 | 26 | 2023 |
Altering microtubule dynamics is synergistically toxic with spindle assembly checkpoint inhibition KM Schukken, YC Lin, PL Bakker, M Schubert, SF Preuss, JE Simon, ... Life science alliance 3 (2), 2020 | 24 | 2020 |
Ten simple rules for getting help from online scientific communities GM Dall'Olio, J Marino, M Schubert, KL Keys, MI Stefan, CS Gillespie, ... PLOS Computational Biology 7 (9), e1002202, 2011 | 20 | 2011 |
Double-strand break toxicity is chromatin context independent A Friskes, L Koob, L Krenning, TM Severson, ES Koeleman, X Vergara, ... Nucleic Acids Research 50 (17), 9930-9947, 2022 | 18 | 2022 |
The impact of monosomies, trisomies and segmental aneuploidies on chromosomal stability DC Hintzen, M Soto, M Schubert, B Bakker, DCJ Spierings, K Szuhai, ... PLoS One 17 (7), e0268579, 2022 | 16* | 2022 |
Cancer tolerance to chromosomal instability is driven by Stat1 inactivation in vivo M Schubert, C Hong, LJ Jilderda, M Requesens-Rueda, AE Tijhuis, ... bioRxiv, 2021 | 8 | 2021 |
epiAneufinder identifies copy number alterations from single-cell ATAC-seq data A Ramakrishnan, A Symeonidi, P Hanel, KT Schmid, ML Richter, ... Nature Communications 14 (1), 5846, 2023 | 6 | 2023 |
Exploiting combinatorial patterns in cancer genomic data for personalized therapy and new target discovery M Schubert, F Iorio Pharmacogenomics 15 (16), 1943-1946, 2014 | 6 | 2014 |
Predicting CIN rates from single-cell whole genome sequencing data using an in silico model B Bakker, M Schubert, ACF Bolhaqueiro, GJPL Kops, DCJ Spierings, ... bioRxiv, 2023.02. 14.528596, 2023 | 5 | 2023 |
clustermq enables efficient parallelization of genomic analyses M Schubert Bioinformatics 35 (21), 4493-4495, 2019 | 5 | 2019 |
MND1 enables homologous recombination in somatic cells primarily outside the context of replication L Koob, A Friskes, L van Bergen, FM Feringa, B van den Broek, ... Molecular Oncology 17 (7), 1192-1211, 2023 | 4 | 2023 |