The clonal and mutational evolution spectrum of primary triple-negative breast cancers SP Shah, A Roth, R Goya, A Oloumi, G Ha, Y Zhao, G Turashvili, J Ding, ... Nature 486 (7403), 395-399, 2012 | 2290 | 2012 |
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution P Eirew, A Steif, J Khattra, G Ha, D Yap, H Farahani, K Gelmon, S Chia, ... Nature 518 (7539), 422-426, 2015 | 659 | 2015 |
Distinct evolutionary trajectories of primary high‐grade serous ovarian cancers revealed through spatial mutational profiling A Bashashati, G Ha, A Tone, J Ding, LM Prentice, A Roth, J Rosner, ... The Journal of pathology 231 (1), 21-34, 2013 | 498 | 2013 |
TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data G Ha, A Roth, J Khattra, J Ho, D Yap, LM Prentice, N Melnyk, ... Genome research 24 (11), 1881-1893, 2014 | 397 | 2014 |
Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer A McPherson, A Roth, E Laks, T Masud, A Bashashati, AW Zhang, G Ha, ... Nature genetics 48 (7), 758-767, 2016 | 345 | 2016 |
Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer G Ha, A Roth, D Lai, A Bashashati, J Ding, R Goya, R Giuliany, J Rosner, ... Genome research 22 (10), 1995-2007, 2012 | 311 | 2012 |
DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer A Bashashati, G Haffari, J Ding, G Ha, K Lui, J Rosner, DG Huntsman, ... Genome biology 13, 1-14, 2012 | 283 | 2012 |
Histological transformation and progression in follicular lymphoma: a clonal evolution study R Kridel, FC Chan, A Mottok, M Boyle, P Farinha, K Tan, B Meissner, ... PLoS medicine 13 (12), e1002197, 2016 | 236 | 2016 |
A salmonid EST genomic study: genes, duplications, phylogeny and microarrays BF Koop, KR Von Schalburg, J Leong, N Walker, R Lieph, GA Cooper, ... BMC genomics 9, 1-16, 2008 | 190 | 2008 |
CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor T Funnell, S Tasaki, A Oloumi, S Araki, E Kong, D Yap, Y Nakayama, ... Nature Communications 8 (1), 7, 2017 | 55 | 2017 |
Recurrent DICER1 hotspot mutations in endometrial tumours and their impact on microRNA biogenesis J Chen, Y Wang, MK McMonechy, MS Anglesio, W Yang, J Senz, ... The Journal of pathology 237 (2), 215-225, 2015 | 47 | 2015 |
Kronos: a workflow assembler for genome analytics and informatics MJ Taghiyar, J Rosner, D Grewal, BM Grande, R Aniba, J Grewal, ... Gigascience 6 (7), gix042, 2017 | 12 | 2017 |
Divergent Modes of Tumor Evolution Underlie Histological Transformation and Early Progression of Follicular Lymphoma FC Chan, R Kridel, A Mottok, M Boyle, P Farinha, K Tan, B Meissner, ... Blood, The Journal of the American Society of Hematology 128 (22), 1091-1091, 2016 | | 2016 |
Recurrent DICER1 hotspot mutations in endometrial cancer and their impact on microRNA biogenesis J Chen, Y Wang, M McConechy, M Anglesio, J Senz, W Yang, J Rosner, ... Cancer Research 74 (19_Supplement), 544-544, 2014 | | 2014 |
DriverNet package A Bashashati, R Haffari, J Ding, G Ha, K Liu, J Rosner, S Shah | | 2013 |
Package ‘DriverNet’ A Bashashati, R Haffari, J Ding, G Ha, K Liu, J Rosner, S Shah, MJ Ding | | 2012 |
Or13. Advancing the promise of personalized management of prostate cancer using next generation sequencing and computer science S Volik, A Lapuk, C Wu, S Shah, A McPherson, F Hormozdiari, A Haegert, ... Acta Biochim Biophys Sin 42 (20100600), 2010 | | 2010 |
Package ‘DriverNet’ A Bashashati, R Haffari, J Ding, G Ha, K Liu, J Rosner, S Shah, MJ Ding | | |
TITAN: Inference of copy number architectures in clonal cell populations from tumour whole genome sequence data Supplementary Material G Ha, A Roth, J Khattra, J Ho, D Yap, LM Prentice, N Melnyk, ... | | |
Additional Text-Drivernet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer A Bashashati, G Haffari, J Ding, G Ha, K Lui, J Rosner, D Huntsman, ... | | |