Predictions of the SARS-CoV-2 omicron variant (B. 1.1. 529) spike protein receptor-binding domain structure and neutralizing antibody interactions CT Ford, D Jacob Machado, DA Janies Frontiers in Virology, 2, 2022 | 42 | 2022 |
StrainHub: a phylogenetic tool to construct pathogen transmission networks A de Bernardi Schneider, CT Ford, R Hostager, J Williams, M Cioce, ... Bioinformatics 646, 2019 | 36 | 2019 |
Whole Genome Sequencing of Plasmodium vivax Isolates Reveals Frequent Sequence and Structural Polymorphisms in Erythrocyte Binding Genes A Ford, D Kepple, BR Abagero, J Connors, R Pearson, S Auburn, ... PLoS Neglected Tropical Diseases 14 (10), 1-27, 2020 | 26 | 2020 |
Assessment of predicted enzymatic activity of α‐N‐acetylglucosaminidase variants of unknown significance for CAGI 2016 WT Clark, L Kasak, C Bakolitsa, Z Hu, G Andreoletti, G Babbi, Y Bromberg, ... Human mutation 40 (9), 1519-1529, 2019 | 17 | 2019 |
Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria CT Ford, D Janies | 9 | 2020 |
Gene polymorphisms among Plasmodium vivax geographical isolates and the potential as new biomarkers for gametocyte detection A Ford, D Kepple, J Williams, G Kolesar, CT Ford, A Abebe, L Golassa, ... Frontiers in Cellular and Infection Microbiology 11, 789417, 2022 | 6 | 2022 |
Genetic capitalism and stabilizing selection of antimicrobial resistance genotypes in Escherichia coli CT Ford, GL Zenarosa, KB Smith, DC Brown, J Williams, D Janies Cladistics 36 (4), 348-357, 2020 | 5 | 2020 |
A parallelized strategy for epistasis analysis based on Empirical Bayesian Elastic Net models J Wen, CT Ford, D Janies, X Shi Bioinformatics 36 (12), 3803-3810, 2020 | 5 | 2020 |
Modeling plasmodium falciparum diagnostic test sensitivity using machine learning with histidine-rich Protein 2 variants CT Ford, GS Alemayehu, K Blackburn, K Lopez, CC Dieng, L Golassa, ... Frontiers in Tropical Diseases 2, 28, 2021 | 4 | 2021 |
Comparative transcriptomics reveal differential gene expression among Plasmodium vivax geographical isolates and implications on erythrocyte invasion … D Kepple, CT Ford, J Williams, B Abagero, S Li, J Popovici, D Yewhalaw, ... PLOS Neglected Tropical Diseases 18 (1), e0011926, 2024 | 3 | 2024 |
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods N Null, S Jain, C Bakolitsa, SE Brenner, P Radivojac, J Moult, S Repo, ... Genome Biology 25 (1), 1-46, 2024 | 3 | 2024 |
Phylogeny, ancestral ranges and reclassification of sand dollars H Lee, KS Lee, CH Hsu, CW Lee, CE Li, JK Wang, CC Tseng, WJ Chen, ... Scientific Reports 13 (1), 10199, 2023 | 3 | 2023 |
Sequencing data of North American SARS-CoV-2 isolates shows widespread complex variants CT Ford, R Scott, DJ Machado, D Janies medRxiv, 2021.01. 27.21250648, 2021 | 3 | 2021 |
Spread of middle east respiratory coronavirus: Genetic versus epidemiological data DA Janies, C Ford, L Damodaran, Z Witter Online journal of public health informatics 9 (1), 2017 | 3 | 2017 |
Human cytokine and coronavirus nucleocapsid protein interactivity using large-scale virtual screens PJ Tomezsko, CT Ford, AE Meyer, AM Michaleas, R Jaimes III Frontiers in Bioinformatics 4, 1397968, 2024 | 2 | 2024 |
Genetic variations of Plasmodium falciparum circumsporozoite protein and the impact on interactions with human immunoproteins and malaria vaccine efficacy CC Dieng, CT Ford, A Lerch, D Doniou, K Vegesna, D Janies, L Cui, ... Infection, Genetics and Evolution 110, 105418, 2023 | 2 | 2023 |
Predicting changes in neutralizing antibody activity for SARS-CoV-2 XBB.1.5 using in silico protein modeling CT Ford, S Yasa, DJ Machado, RA White III, D Janies Frontiers in Virology 3, 2023 | 2 | 2023 |
Nationwide surveillance of Pfhrp2 exon 2 diversity in Plasmodium falciparum circulating in symptomatic malaria patients living in Ghana DG Bredu, GK Ahadzi, D Donu, NY Peprah, A Asamoah, GA Asumah, ... The American Journal of Tropical Medicine and Hygiene 106 (6), 1660, 2022 | 2 | 2022 |
An integrated phylogeographic analysis of the Bantu migration CT Ford The University of North Carolina at Charlotte, 2018 | 2 | 2018 |
Behavioral and transcriptomic analyses of mecp2 function in zebrafish NJ Santistevan, CT Ford, CS Gilsdorf, Y Grinblat American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, e32981, 2024 | 1 | 2024 |