Reconstruction of a genome-scale metabolic model and in-silico flux analysis of Aspergillus tubingensis: a non-mycotoxinogenic citric acid-producing fungus M Kaushal, DJ Upton, JK Gupta, AJ Wood, S Srivastava Biotechnology for biofuels and bioproducts 17 (1), 70, 2024 | | 2024 |
Marine cyanobacterial biomass is an efficient feedstock for fungal bioprocesses JK Gupta, KK Jain, M Kaushal, DJ Upton, M Joshi, P Pachauri, AJ Wood, ... Biotechnology for biofuels and bioproducts 17 (1), 23, 2024 | | 2024 |
Robustness of steady state and stochastic cyclicity in generalized coalescence-fragmentation models BT Fagan, NJ MacKay, AJ Wood The European Physical Journal B 97 (2), 21, 2024 | | 2024 |
Superiority of chromosomal compared to plasmid-encoded compensatory mutations RCT Wright, J Wood, MJ Bottery, KJ Muddiman, S Paterson, E Harrison, ... bioRxiv, 2024.01. 15.575717, 2024 | | 2024 |
Quantifying Counterfactual Military History B Fagan, I Horwood, N MacKay, C Price, AJ Wood CRC Press, 2023 | | 2023 |
The effects of antibiotic combination treatments on Pseudomonas aeruginosa tolerance evolution and coexistence with Stenotrophomonas maltophilia JP Law, AJ Wood, VP Friman Microbiology spectrum 10 (6), e01842-22, 2022 | 2 | 2022 |
Modeling N-Glycosylation: A Systems Biology Approach for Evaluating Changes in the Steady-State Organization of Golgi-Resident Proteins R Morgan, B West, AJ Wood, D Ungar Golgi: Methods and Protocols, 663-690, 2022 | | 2022 |
DUNE Offline Computing Conceptual Design Report A Abed Abud, B Abi, R Acciarri, MA Acero, MR Adames, G Adamov, ... Fermilab, 2022 | | 2022 |
Inter-species interactions alter antibiotic efficacy in bacterial communities MJ Bottery, JL Matthews, AJ Wood, HK Johansen, JW Pitchford, ... The ISME Journal 16 (3), 812-821, 2022 | 50 | 2022 |
Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate DJ Upton, M Kaushal, C Whitehead, L Faas, LD Gomez, ... Biotechnology for biofuels and bioproducts 15 (1), 4, 2022 | 4 | 2022 |
Computational Modeling of Glycan Processing in the Golgi for Investigating Changes in the Arrangements of Biosynthetic Enzymes B West, AJ Wood, D Ungar Glycosylation: Methods and Protocols, 209-222, 2022 | | 2022 |
Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation JPJ Hall, RCT Wright, E Harrison, KJ Muddiman, AJ Wood, S Paterson, ... PLoS biology 19 (10), e3001225, 2021 | 88 | 2021 |
Rapid compensatory evolution can rescue low fitness symbioses following partner switching MES Sørensen, AJ Wood, DD Cameron, MA Brockhurst Current Biology 31 (17), 3721-3728. e4, 2021 | 12 | 2021 |
Stochastic gel-shatter cycles in coalescence-fragmentation models BT Fagan, NJ MacKay, DO Pushkin, AJ Wood Europhysics Letters 133 (5), 53001, 2021 | 2 | 2021 |
A computational model linking the organization of the mammalian glycosylation machinery with glycan processing P Fisher, H Spencer, NJ Bryant, JE Thomas-Oates, AJ Wood, D Ungar GLYCOBIOLOGY 30 (12), 1121-1121, 2020 | | 2020 |
In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output DJ Upton, SJ McQueen-Mason, AJ Wood Biotechnology for biofuels 13, 1-21, 2020 | 24 | 2020 |
Simulating the evolutionary trajectories of metabolic pathways for insect symbionts in the genus Sodalis RJ Hall, S Thorpe, GH Thomas, AJ Wood Microbial Genomics 6 (7), e000378, 2020 | 10 | 2020 |
Change point analysis of historical battle deaths BT Fagan, MI Knight, NJ MacKay, A Jamie Wood Journal of the Royal Statistical Society: Series A (Statistics in Society …, 2020 | 17* | 2020 |
Change point analysis of historical battle deaths BT Fagan, MI Knight, NJ MacKay, A Jamie Wood Journal of the Royal Statistical Society: Series A (Statistics in Society …, 2020 | | 2020 |
Comparison of independent evolutionary origins reveals both convergence and divergence in the metabolic mechanisms of symbiosis MES Sørensen, AJ Wood, EJA Minter, CD Lowe, DD Cameron, ... Current Biology 30 (2), 328-334. e4, 2020 | 19 | 2020 |