Ribosome decision graphs for the representation of eukaryotic RNA translation complexity JAS Tierney, M Świrski, H Tjeldnes, JM Mudge, J Kufel, N Whiffin, E Valen, ... Genome Research 34 (4), 530-538, 2024 | 2 | 2024 |
Characterisation of HNF1A variants in paediatric diabetes in Norway using functional and clinical investigations to unmask phenotype and monogenic diabetes P Svalastoga, A Kaci, J Molnes, MH Solheim, BB Johansson, L Krogvold, ... Diabetologia 66 (12), 2226-2237, 2023 | 1 | 2023 |
Comprehensive contact tracing during an outbreak of alpha-variant SARS-CoV-2 in a rural community reveals less viral genomic diversity and higher household secondary attack … A Sivertsen, N Mortensen, U Solem, E Valen, MF Bullita, KA Wensaas, ... bioRxiv, 2023.11. 17.567570, 2023 | | 2023 |
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing O Begik, G Diensthuber, H Liu, A Delgado-Tejedor, C Kontur, AM Niazi, ... Nature Methods 20 (1), 75-85, 2023 | 17 | 2023 |
Nye CRISPR-metoder og mer presis presisjonsmedisin E Valen Tidsskrift for Den norske legeforening, 2022 | | 2022 |
Long-read single-molecule RNA structure sequencing using nanopore TT Bizuayehu, K Labun, M Jakubec, K Jefimov, AM Niazi, E Valen Nucleic Acids Research 50 (20), e120-e120, 2022 | 15* | 2022 |
Small open reading frames, how to find them and determine their function PM Kute, O Soukarieh, H Tjeldnes, DA Trégouët, E Valen Frontiers in genetics 12, 796060, 2022 | 20 | 2022 |
Rapid genome editing by CRISPR-Cas9-POLD3 fusion G Reint, Z Li, K Labun, S Keskitalo, I Soppa, K Mamia, E Tolo, ... Elife 10, e75415, 2021 | 12 | 2021 |
ORFik: a comprehensive R toolkit for the analysis of translation H Tjeldnes, K Labun, Y Torres Cleuren, K Chyżyńska, M Świrski, E Valen BMC bioinformatics 22 (1), 336, 2021 | 26 | 2021 |
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network M Grapotte, M Saraswat, C Bessière, C Menichelli, JA Ramilowski, ... Nature communications 12 (1), 3297, 2021 | 15 | 2021 |
Deep conservation of ribosome stall sites across RNA processing genes K Chyżyńska, K Labun, C Jones, SN Grellscheid, E Valen NAR Genomics and Bioinformatics 3 (2), lqab038, 2021 | 17 | 2021 |
CRISPR genome editing made easy through the CHOPCHOP website K Labun, M Krause, Y Torres Cleuren, E Valen Current Protocols 1 (4), e46, 2021 | 35 | 2021 |
Transcript isoform-specific estimation of poly (A) tail length by Nanopore sequencing of native RNA AM Niazi, M Krause, E Valen RNA bioinformatics, 543-567, 2021 | 8 | 2021 |
Assessment of tumor suppressor promoter methylation in healthy individuals DB Poduval, E Ognedal, Z Sichmanova, E Valen, GT Iversen, L Minsaas, ... Clinical Epigenetics 12, 1-15, 2020 | 13 | 2020 |
Profiling of small ribosomal subunits reveals modes and regulation of translation initiation A Giess, YNT Cleuren, H Tjeldnes, M Krause, TT Bizuayehu, S Hiensch, ... Cell reports 31 (3), 2020 | 32 | 2020 |
Intellectual disability in KATP channel neonatal diabetes P Svalastoga, Å Sulen, JR Fehn, SM Aukland, H Irgens, E Sirnes, ... Diabetes Care 43 (3), 526-533, 2020 | 17 | 2020 |
Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation M Pálfy, G Schulze, E Valen, NL Vastenhouw PLoS genetics 16 (1), e1008546, 2020 | 68 | 2020 |
Trans-splicing of mRNAs links gene transcription to translational control regulated by mTOR GB Danks, H Galbiati, M Raasholm, YN Torres Cleuren, E Valen, ... BMC genomics 20, 1-14, 2019 | 2 | 2019 |
tailfindr: alignment-free poly (A) length measurement for Oxford Nanopore RNA and DNA sequencing M Krause, AM Niazi, K Labun, YNT Cleuren, FS Müller, E Valen RNA 25 (10), 1229-1241, 2019 | 77 | 2019 |
CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing K Labun, TG Montague, M Krause, YN Torres Cleuren, H Tjeldnes, ... Nucleic acids research 47 (W1), W171-W174, 2019 | 1317 | 2019 |