| Insights, opportunities and challenges provided by large cell atlases M Hemberg, F Marini, S Ghazanfar, AA Ajami, N Abassi, B Anchang, ... arXiv preprint arXiv:2408.06563, 2024 | | 2024 |
| Mining alternative splicing patterns in scRNA-seq data using scASfind Y Song, G Parada, JTH Lee, M Hemberg Genome Biology 25 (1), 197, 2024 | | 2024 |
| Compositions comprising nullomers and methods of using the same for cancer detection and diagnosis N Ahituv, O Yizhar-barnea, I Georgakopouos-soares, I Mouratidis, ... US Patent App. 18/558,992, 2024 | | 2024 |
| A metabolic switch orchestrated by IL-18 and the cyclic dinucleotide cGAMP programs intestinal tolerance RT Mertens, A Misra, P Xiao, S Baek, JM Rone, D Mangani, ... Immunity, 2024 | | 2024 |
| ApoE ε4-dependent alteration of CXCR3+CD127+ CD4+ T cells is associated with elevated plasma neurofilament light chain in Alzheimer’s disease D Hu, M Chen, X Li, P Morin, S Daley, Y Han, M Hemberg, HL Weiner, ... bioRxiv, 2024.05. 28.596276, 2024 | | 2024 |
| Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods D Neavin, A Senabouth, H Arora, JTH Lee, A Ripoll-Cladellas, ... Genome Biology 25 (1), 94, 2024 | 15 | 2024 |
| Integrative analysis of transcriptomic and epigenomic data reveals distinct patterns for developmental and housekeeping gene regulation I Abnizova, C Stapel, R Boekhorst, JTH Lee, M Hemberg BMC biology 22 (1), 78, 2024 | | 2024 |
| Single-cell and spatial transcriptomics: Bridging current technologies with long-read sequencing CU Yuan, FX Quah, M Hemberg Molecular Aspects of Medicine 96, 101255, 2024 | 2 | 2024 |
| Understanding spatial organization of cellular plasticity in pancreatic ductal adenocarcinoma I Zamora, M Parikh, BK Patel, L Bi, D Haviv, J Cao, C Shiau, M Hemberg, ... Cancer Research 84 (6_Supplement), 3873-3873, 2024 | | 2024 |
| Therapy-associated remodeling of pancreatic cancer revealed by single-cell spatial transcriptomics and optimal transport analysis J CAO, C Shiau, D Gong, MT Gregory, X Yin, JW Cho, PL Wang, J Su, ... Cancer Research 84 (6_Supplement), 3878-3878, 2024 | | 2024 |
| Deep spatial immunophenotyping of lymphoid aggregates in pancreatic cancer using multi-omic integration of ultra high-plex proteomics and transcriptomics D Gong, J Cao, P Wang, N Jhaveri, Y Hou, BB Cheikh, HY Ji, M Gregory, ... Cancer Research 84 (6_Supplement), 3988-3988, 2024 | | 2024 |
| Joint analysis of mutational and transcriptional landscapes in human cancer reveals key perturbations during cancer evolution JW Cho, J Cao, M Hemberg Genome Biology 25 (1), 65, 2024 | | 2024 |
| Immune-restoring CAR-T cells display antitumor activity and reverse immunosuppressive TME in a humanized ccRCC mouse model Y Wang, JW Cho, G Kastrunes, A Buck, C Razimbaud, AC Culhane, J Sun, ... Iscience 27 (2), 2024 | 1 | 2024 |
| MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures TPH Sit, RC Feord, AWE Dunn, J Chabros, D Oluigbo, HH Smith, L Burn, ... bioRxiv, 2024 | | 2024 |
| Abstract B106: Spatially-constrained optimal transport interaction analysis reveals therapy-associated remodeling in the pancreatic cancer microenvironment C Shiau, J Cao, MT Gregory, D Gong, X Yin, JW Cho, PL Wang, J Su, ... Cancer Research 84 (2_Supplement), B106-B106, 2024 | | 2024 |
| Decoupling NAD+ metabolic dependency in chondrosarcoma by targeting the SIRT1-HIF-2α axis J Suh, H Kim, J Min, HJ Yeon, M Hemberg, L Scimeca, MR Wu, HG Kang, ... Cell Reports Medicine 5 (1), 2024 | 3 | 2024 |
| Spatially-constrained optimal transport interaction analysis reveals therapy-associated remodeling in the pancreatic cancer microenvironment C Shiau, J Cao, MT Gregory, D Gong, X Yin, JW Cho, PL Wang, J Su, ... CANCER RESEARCH 84 (2), 2024 | | 2024 |
| Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas WE Gordon, S Baek, HP Nguyen, YM Kuo, R Bradley, SL Fong, N Kim, ... Nature communications 15 (1), 12, 2024 | | 2024 |
| Detecting known neoepitopes, gene fusions, transposable elements, and circular RNAs in cell-free RNA M Mahajan, M Hemberg medRxiv, 2024.06. 07.24308622, 2024 | | 2024 |
| Single-cell analysis reveals cellular and molecular factors counteracting HPV-positive oropharyngeal cancer immunotherapy outcomes J Cha, G Kim, JW Cho, E Sung, S Baek, MH Hong, CG Kim, NS Sim, ... Journal for Immunotherapy of Cancer 12 (6), 2024 | | 2024 |
