| The evolution of computational research in a data-centric world D Deshpande, K Chhugani, T Ramesh, M Pellegrini, S Shiffman, ... Cell 187 (17), 4449-4457, 2024 | | 2024 |
| Best practices to evaluate the impact of biomedical research software—metric collection beyond citations A Afiaz, AA Ivanov, J Chamberlin, D Hanauer, CL Savonen, MJ Goldman, ... Bioinformatics 40 (8), 2024 | | 2024 |
| Large-scale genotype prediction from RNA sequence data necessitates a new ethical and policy framework MA Majumder, JT Leek, KD Hansen, A Razi, AL McGuire Nature Genetics, 1-4, 2024 | | 2024 |
| From Narratives to Numbers: Valid Inference Using Language Model Predictions from Verbal Autopsy Narratives S Fan, A Visokay, K Hoffman, S Salerno, L Liu, JT Leek, TH McCormick arXiv preprint arXiv:2404.02438, 2024 | 1 | 2024 |
| Do We Really Even Need Data? K Hoffman, S Salerno, A Afiaz, JT Leek, TH McCormick arXiv preprint arXiv:2401.08702, 2024 | 1 | 2024 |
| Genotype prediction of 336,463 samples from public expression data A Razi, CC Lo, S Wang, JT Leek, KD Hansen bioRxiv, 2024 | | 2024 |
| What's the best chatbot for me? Researchers put LLMs through their paces. EM Humphries, C Wright, AM Hoffman, C Savonen, JT Leek Nature, 2023 | 5 | 2023 |
| Evaluation of software impact designed for biomedical research: Are we measuring what’s meaningful? A Afiaz, AA Ivanov, J Chamberlin, D Hanauer, CL Savonen, MJ Goldman, ... ArXiv, 2023 | 1 | 2023 |
| Open-source Tools for Training Resources–OTTR C Savonen, C Wright, AM Hoffman, J Muschelli, K Cox, FJ Tan, JT Leek Journal of Statistics and Data Science Education 31 (1), 57-65, 2023 | 6 | 2023 |
| Motivation, inclusivity, and realism should drive data science education C Savonen, C Wright, A Hoffman, E Humphries, K Cox, F Tan, J Leek F1000Research 12, 2023 | 1 | 2023 |
| Diversifying the genomic data science research community R Alcazar, M Alvarez, R Arnold, M Ayalew, LG Best, MC Campbell, ... Genome Research 32 (7), 1231-1241, 2022 | 3 | 2022 |
| Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ... Cell Genomics 2 (1), 2022 | 98 | 2022 |
| recount3: summaries and queries for large-scale RNA-seq expression and splicing C Wilks, SC Zheng, FY Chen, R Charles, B Solomon, JP Ling, EL Imada, ... Genome biology 22, 1-40, 2021 | 141 | 2021 |
| Diagnosing Data Analytic Problems in the Classroom RD Peng, A Chen, E Bridgeford, JT Leek, SC Hicks Journal of Statistics and Data Science Education 29 (3), 267-276, 2021 | 9 | 2021 |
| Gene and protein expression in human megakaryocytes derived from induced pluripotent stem cells K Kammers, MA Taub, RA Mathias, LR Yanek, K Kanchan, ... Journal of Thrombosis and Haemostasis 19 (7), 1783-1799, 2021 | 8 | 2021 |
| Linking open-source code commits and MOOC grades to evaluate massive online open peer review S Wang, LR Jager, K Kammers, A Hadavand, JT Leek arXiv preprint arXiv:2104.12555, 2021 | 4 | 2021 |
| Transcriptional profile of platelets and iPSC-derived megakaryocytes from whole-genome and RNA sequencing K Kammers, MA Taub, B Rodriguez, LR Yanek, I Ruczinski, J Martin, ... Blood, The Journal of the American Society of Hematology 137 (7), 959-968, 2021 | 21 | 2021 |
| Strategies for cellular deconvolution in human brain RN A sequencing data [version 1; peer review: awaiting peer OA Sosina, MN Tran, KR Maynard, R Tao, MA Taub, K Martinowich, ... | | 2021 |
| Reproducible research RD Peng, D Caffo, J Leek Coursera lecture, Week 1, 2021 | 2 | 2021 |
| Methods for correcting inference based on outcomes predicted by machine learning S Wang, TH McCormick, JT Leek Proceedings of the National Academy of Sciences 117 (48), 30266-30275, 2020 | 60 | 2020 |
