Emerging structures and dynamic mechanisms of γ-secretase for Alzheimer’s disease Y Miao, MS Wolfe Neural Regeneration Research 20 (1), 174-180, 2025 | | 2025 |
Exploration of 19F-qNMR in Tapping the Functions of Intermediate GPCR-G Protein Complex L Ye, M Bi, X Wang, J Wang, Y Miao, Y Cheng Journal of Pharmacology and Experimental Therapeutics 389 (S3), 2024 | | 2024 |
Understanding the impact of binding free energy and kinetics calculations in modern drug discovery VA Adediwura, K Koirala, HN Do, J Wang, Y Miao Expert Opinion on Drug Discovery, 1-12, 2024 | | 2024 |
Structure and function of an intermediate GPCR-Gαβγ complex M Bi, X Wang, J Wang, J Xu, W Sun, VA Adediwura, Y Miao, Y Cheng, ... bioRxiv, 2024.04. 02.587841, 2024 | | 2024 |
Gaussian Accelerated Molecular Dynamics in Drug Discovery HN Do, J Wang, K Joshi, K Koirala, Y Miao Computational Drug Discovery: Methods and Applications 1, 21-43, 2024 | | 2024 |
Mechanistic insights into ligand dissociation from the SARS-CoV-2 spike glycoprotein T Hasse, E Mantei, R Shahoei, S Pawnikar, J Wang, Y Miao, YM Huang PLOS Computational Biology 20 (3), e1011955, 2024 | | 2024 |
Familial Alzheimer mutations stabilize synaptotoxic γ-secretase-substrate complexes S Devkota, R Zhou, V Nagarajan, M Maesako, H Do, A Noorani, ... Cell Reports 43 (2), 2024 | 3 | 2024 |
Characterization of natural product inhibitors of quorum sensing in Pseudomonas aeruginosa reveals competitive inhibition of RhlR by ortho-vanillin KE Woods, S Akhter, B Rodriguez, KA Townsend, N Smith, B Smith, ... bioRxiv, 2024.02. 24.581676, 2024 | | 2024 |
Structural basis of agonist specificity of α1A-adrenergic receptor J Wang, M Su, G Xiang, HN Do, JT Levitz, Y Miao, X Huang Biophysical Journal 123 (3), 396a-397a, 2024 | | 2024 |
Mechanism of Ligand Binding to Theophylline RNA Aptamer S Akhter, Z Tang, J Wang, M Haboro, ED Holmstrom, J Wang, Y Miao Journal of Chemical Information and Modeling 64 (3), 1017-1029, 2024 | | 2024 |
Activation of Polycystin-1 Signaling by Binding of Stalk-derived Peptide Agonists S Pawnikar, BS Magenheimer, EN Munoz, A Haldane, RL Maser, Y Miao bioRxiv, 2024 | | 2024 |
Ligand Gaussian accelerated Molecular Dynamics 3 (LiGaMD3): Improved Calculations of Binding Thermodynamics and Kinetics of Both Small Molecules and Flexible Peptides J Wang, Y Miao bioRxiv, 2024.05. 06.592668, 2024 | | 2024 |
Mechanistic Insights into Peptide Binding and Deactivation of an Adhesion G Protein-Coupled Receptor VA Adediwura, Y Miao Molecules 29 (1), 164, 2023 | | 2023 |
Molecular Dynamics Activation of γ-Secretase for Cleavage of the Notch1 Substrate HN Do, SR Malvankar, MS Wolfe, Y Miao ACS Chemical Neuroscience 14 (23), 4216-4226, 2023 | 1 | 2023 |
Deep learning dynamic allostery of G-protein-coupled receptors HN Do, J Wang, Y Miao JACS Au 3 (11), 3165-3180, 2023 | 5 | 2023 |
Accelerating Molecular Dynamics Simulations for Drug Discovery K Koirala, K Joshi, V Adediwura, J Wang, H Do, Y Miao Computational Drug Discovery and Design, 187-202, 2023 | | 2023 |
Structural basis of agonist specificity of α1A-adrenergic receptor M Su, J Wang, G Xiang, HN Do, J Levitz, Y Miao, XY Huang Nature Communications 14 (1), 4819, 2023 | 2 | 2023 |
Structural dynamics of chemokine receptors. S Pawnikar, S Akhter, Y Miao Vitamins and Hormones 123, 645-662, 2023 | | 2023 |
Pharmacological hallmarks of allostery at the M4 muscarinic receptor elucidated through structure and dynamics Z Vuckovic, J Wang, V Pham, JI Mobbs, MJ Belousoff, A Bhattarai, ... Elife 12, e83477, 2023 | 9 | 2023 |
Deep Boosted Molecular Dynamics: Accelerating Molecular Simulations with Gaussian Boost Potentials Generated Using Probabilistic Bayesian Deep Neural Network HN Do, Y Miao The journal of physical chemistry letters 14 (21), 4970-4982, 2023 | 4 | 2023 |