Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the US R Lopes, K Pham, F Klaassen, MH Chitwood, AM Hahn, S Redmond, ... Cell Reports 43 (7), 2024 | | 2024 |
Approaches for M. tuberculosis Transmission Inference Based on Genomic Data T Cohen, C Colijn, JL Warren American Journal of Respiratory and Critical Care Medicine, 2024 | | 2024 |
Corrigendum to—“Identifying local foci of tuberculosis transmission in Moldova using a spatial multinomial logistic regression model”[eBioMedicine 102 (2024) 105085] Y Lan, V Crudu, N Ciobanu, A Codreanu, MH Chitwood, B Sobkowiak, ... EBioMedicine 105, 2024 | | 2024 |
Large-scale genomic analysis of SARS-CoV-2 Omicron BA. 5 emergence in the United States K Pham, C Chaguza, R Lopes, T Cohen, E Taylor-Salmon, M Wilkinson, ... bioRxiv, 2024.06. 20.599933, 2024 | | 2024 |
Predictors of unsuccessful tuberculosis treatment outcomes in Brazil: an analysis of 259,484 patient records DK Ryuk, DM Pelissari, K Alves, PB Oliveira, MC Castro, T Cohen, ... BMC Infectious Diseases 24 (1), 531, 2024 | | 2024 |
Impact and cost-effectiveness of the 6-month BPaLM regimen for rifampicin-resistant tuberculosis in Moldova: A mathematical modeling analysis LP James, F Klaassen, S Sweeney, J Furin, MF Franke, R Yaesoubi, ... Plos Medicine 21 (5), e1004401, 2024 | | 2024 |
Factors associated with tuberculosis treatment initiation among bacteriologically negative individuals evaluated for tuberculosis: an individual patient data meta-analysis S Kim, MH Can, TB Agizew, AF Auld, ME Balcells, S Bjerrum, K Dheda, ... medRxiv, 2024 | | 2024 |
The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova MH Chitwood, C Colijn, C Yang, V Crudu, N Ciobanu, A Codreanu, J Kim, ... Nature Communications 15 (1), 2962, 2024 | 1 | 2024 |
Disparities in Tuberculosis Incidence by Race and Ethnicity Among the US-Born Population in the United States, 2011 to 2021: An Analysis of National Disease Registry Data Y Li, M Regan, NA Swartwood, T Barham, GR Beeler Asay, T Cohen, ... Annals of Internal Medicine 177 (4), 418-427, 2024 | 1 | 2024 |
Identifying local foci of tuberculosis transmission in Moldova using a spatial multinomial logistic regression model Y Lan, V Crudu, N Ciobanu, A Codreanu, MH Chitwood, B Sobkowiak, ... EBioMedicine 102, 2024 | | 2024 |
Quantifying gaps in the tuberculosis care cascade in Brazil: A mathematical model study using national program data S Emani, K Alves, LC Alves, DA da Silva, PB Oliveira, MC Castro, ... Plos Medicine 21 (3), e1004361, 2024 | | 2024 |
Estimated rates of progression to tuberculosis disease for persons infected with Mycobacterium tuberculosis in the United States M Ekramnia, Y Li, MB Haddad, SM Marks, JS Kammerer, NA Swartwood, ... Epidemiology 35 (2), 164-173, 2024 | 1 | 2024 |
e3SIM: epidemiological-ecological-evolutionary simulation framework for genomic epidemiology P Xu, S Liang, A Hahn, V Zhao, WTJ Lo, BC Haller, B Sobkowiak, ... bioRxiv, 2024.06. 29.601123, 2024 | | 2024 |
Distribution and transmission of M. tuberculosis in a high-HIV prevalence city in Malawi: a genomic and spatial analysis MH Chitwood, EL Corbett, V Ndhlovu, B Sobkowiak, C Colijn, JR Andrews, ... medRxiv, 2024.05. 17.24307525, 2024 | | 2024 |
A new method for detecting mixed Mycobacterium tuberculosis infection and reconstructing constituent strains provides insights into transmission B Sobkowiak, P Cudahy, MH Chitwood, TG Clark, C Colijn, L Grandjean, ... bioRxiv, 2024.04. 26.591283, 2024 | | 2024 |
Mass incarceration as a driver of the tuberculosis epidemic in Latin America and projected impacts of policy alternatives: A mathematical modeling study Y Liu, Y Mabene, S Camelo, ZV Rueda, DM Pelissari, ... medRxiv, 2024.04. 23.24306238, 2024 | | 2024 |
The long-term impacts of domestic and international TB service improvements on TB trends within the United States: a mathematical modelling study NA Menzies, NA Swartwood, T Cohen, SM Marks, SA Maloney, ... medRxiv, 2024.03. 20.24304585, 2024 | | 2024 |
Cost-effectiveness and health impact of screening and treatment of Mycobacterium tuberculosis infection among formerly incarcerated individuals in Brazil A van Lieshout Titan, F Klaassen, DM Pelissari, J Nildo de Barros Silva Jr, ... medRxiv, 2024.01. 03.23300373, 2024 | | 2024 |
Racial and ethnic disparities in diagnosis and treatment outcomes among US-born people diagnosed with tuberculosis, 2003–19: an analysis of national surveillance data M Regan, Y Li, NA Swartwood, T Barham, GRB Asay, T Cohen, AN Hill, ... The Lancet Public Health 9 (1), e47-e56, 2024 | | 2024 |
Predictive power of wastewater for nowcasting infectious disease transmission: a retrospective case study of five sewershed areas in Louisville, Kentucky F Klaassen, RH Holm, T Smith, T Cohen, A Bhatnagar, NA Menzies Environmental Research 240, 117395, 2024 | 3 | 2024 |