Analysis of the genetic diversity in RNA-directed RNA polymerase sequences: implications for an automated RNA virus classification system Z Tian, T Hu, EC Holmes, J Ji, W Shi Virus Evolution, veae059, 2024 | | 2024 |
Recombination as an evolutionary driver of MERS-related coronavirus emergence JE Tolentino, S Lytras, J Ito, EC Holmes, K Sato The Lancet Infectious Diseases, 2024 | | 2024 |
A~ 40-kb flavi-like virus does not encode a known error-correcting mechanism ME Petrone, J Grove, J Mélade, JCO Mifsud, RH Parry, EM Marzinelli, ... Proceedings of the National Academy of Sciences 121 (30), e2403805121, 2024 | | 2024 |
Meta-transcriptomic analysis of companion animal infectomes reveals their diversity and potential roles in animal and human disease WC Wu, YF Pan, WD Zhou, YQ Liao, MW Peng, GY Luo, GY Xin, YN Peng, ... mSphere, e00439-24, 2024 | | 2024 |
From islands to infectomes: host-specific viral diversity among birds across remote islands RM Grimwood, EMR Reyes, J Cooper, J Welch, G Taylor, T Makan, L Lim, ... BMC Ecology and Evolution 24 (1), 84, 2024 | | 2024 |
The radiation of New Zealand’s skinks and geckos is associated with distinct viromes SJ Waller, RG Butcher, L Lim, K McInnes, EC Holmes, JL Geoghegan BMC Ecology and Evolution 24 (1), 81, 2024 | | 2024 |
The diverse liver viromes of Australian geckos and skinks are dominated by hepaciviruses and picornaviruses and reflect host taxonomy and habitat JE Mahar, M Wille, E Harvey, CC Moritz, EC Holmes Virus Evolution 10 (1), 2024 | | 2024 |
Diversity, evolution, and emergence of fish viruses VA Costa, EC Holmes Journal of Virology, e00118-24, 2024 | | 2024 |
A new lineage nomenclature to aid genomic surveillance of dengue virus V Hill, S Cleemput, V Fonseca, H Tegally, AF Brito, R Gifford, VT Tran, ... medRxiv, 2024 | 2 | 2024 |
Metagenomic analysis of individual mosquito viromes reveals the geographical patterns and drivers of viral diversity YF Pan, H Zhao, QY Gou, PB Shi, JH Tian, Y Feng, K Li, WH Yang, D Wu, ... Nature Ecology & Evolution 8 (5), 947-959, 2024 | 1 | 2024 |
Australian terrestrial environments harbour extensive RNA virus diversity S Sadiq, E Harvey, JCO Mifsud, B Minasny, AB McBratney, LE Pozza, ... Virology 593, 110007, 2024 | 1 | 2024 |
The emergence and evolution of SARS-CoV-2 EC Holmes Annual review of virology 11, 2024 | 7 | 2024 |
Host and geography impact virus diversity in New Zealand’s longfin and shortfin eels SJ Waller, E Egan, S Crow, A Charsley, PM Lokman, EK Williams, ... Archives of virology 169 (4), 85, 2024 | | 2024 |
Host adaptive radiation is associated with rapid virus diversification and cross-species transmission in African cichlid fishes VA Costa, F Ronco, JCO Mifsud, E Harvey, W Salzburger, EC Holmes Current Biology 34 (6), 1247-1257. e3, 2024 | 8 | 2024 |
A novel papillomavirus in a New Zealand fur seal (Arctocephalus forsteri) with oral lesions JCO Mifsud, J Hall, K Van Brussel, K Rose, RH Parry, EC Holmes, ... npj Viruses 2 (1), 10, 2024 | | 2024 |
Identification of novel mammalian viruses in tree shrews (Tupaia belangeri chinensis) H Zhou, RR Tian, XR Wang, JX Yang, YX Wang, ML Zhao, XD Zhang, ... Zoological Research 45 (2), 429, 2024 | 2 | 2024 |
The clinical outcome of COVID-19 is strongly associated with microbiome dynamics in the upper respiratory tract L Xie, G Luo, Z Yang, W Wu, J Chen, Y Ren, Z Zeng, G Ye, Y Pan, W Zhao, ... Journal of Infection 88 (3), 106118, 2024 | 1 | 2024 |
The adaptive radiation of New Zealand’s skinks and geckos is associated with distinct viromes SJ Waller, RG Butcher, L Lim, K McInnes, EC Holmes, JL Geoghegan | | 2024 |
Rapid spatial Expansion Beyond the Amazon Basin: Oropouche Virus joins other main arboviruses in epidemic activity across the Americas FC de Melo Iani, FM Pereira, EC de Oliveira, JTN Rodrigues, ... medRxiv, 2024 | | 2024 |
VirID: Beyond Virus Discovery-An Integrated Platform for Comprehensive RNA Virus Characterization Z Yang, Y Shan, X Liu, G Chen, Y Pan, Q Gou, J Zou, Z Chang, Q Zeng, ... bioRxiv, 2024.07. 05.602175, 2024 | | 2024 |