| Phase separation provides a mechanism to drive phenotype switching L Hong, Z Zhang, Z Wang, X Yu, J Zhang Physical Review E 109 (6), 064414, 2024 | | 2024 |
| Plasma microRNA-15a/16-1-based machine learning for early detection of hepatitis B virus-related hepatocellular carcinoma H Wei, S Luo, Y Bi, C Liao, Y Lian, J Zhang, Y Huang Liver Research, 2024 | | 2024 |
| A multi-omic single-cell landscape of cellular diversification in the developing human cerebral cortex Y Tian, X Wu, S Luo, D Xiong, R Liu, L Hu, Y Yuan, G Shi, J Yao, Z Huang, ... Computational and Structural Biotechnology Journal 23, 2173-2189, 2024 | | 2024 |
| Exact results for gene-expression models with general waiting-time distributions J Zhang, A Chen, H Qiu, J Zhang, T Tian, T Zhou Physical Review E 109 (2), 024119, 2024 | 1 | 2024 |
| A unified probabilistic framework for modeling and inferring spatial transcriptomic data Z Huang, S Luo, Z Zhang, Z Wang, T Zhou, J Zhang Current Bioinformatics 19 (3), 222-234, 2024 | 1 | 2024 |
| Nascent RNA kinetics with complex promoter architecture: Analytic results and parameter inference C Shi, X Yang, T Zhou, J Zhang bioRxiv, https://doi.org/10.1101/2023.12.28.57358, 2024 | | 2024 |
| Power-law behavior of transcriptional bursting regulated by enhancer–promoter communication Z Wang, Z Zhang, S Luo, T Zhou, J Zhang Genome Research 34 (1), 106-118, 2024 | 4* | 2024 |
| Phase separation reduces cell-to-cell variability of transcriptional bursting L Hong, Z Wang, S Luo, T Zhou, J Zhang Mathematical Biosciences, 109127, 2024 | 1 | 2024 |
| 4D nucleome equation predicts gene expression controlled by long-range enhancer-promoter interaction Z Wang, S Luo, Z Zhang, T Zhou, J Zhang PLoS Computational Biology 19 (12), e1011722, 2023 | 1 | 2023 |
| Stochastic modeling of the mRNA life process: A generalized master equation C Shi, X Yang, J Zhang, T Zhou Biophysical Journal 122, 1-19, 2023 | 5 | 2023 |
| The effect of aperiodic components in distinguishing Alzheimer's disease from frontotemporal dementia Z Wang, A Liu, J Yu, P Wang, Y Bi, S Xue, J Zhang, H Guo, W Zhang GeroScience, 2023 | 9 | 2023 |
| Inferring transcriptional bursting kinetics from single-cell snapshot data using a generalized telegraph model S Luo, Z Zhang, Z Wang, X Yang, X Chen, T Zhou, J Zhang Royal Society Open Science 10 (4), 221057, 2023 | 13 | 2023 |
| Genome-wide inference reveals that feedback regulations constrain promoter-dependent transcriptional burst kinetics S Luo, Z Wang, Z Zhang, T Zhou, J Zhang Nucleic Acids Research 51 (1), 68-83, 2023 | 19 | 2023 |
| Silent transcription intervals and translational bursting lead to diverse phenotypic switching X Yang, S Luo, Z Zhang, Z Wang, T Zhou, J Zhang Physical Chemistry Chemical Physics 24 (43), 26600-26608, 2022 | 10 | 2022 |
| Machine learning and mathematical models for single-cell data analysis L Ou-Yang, XF Zhang, J Zhang, J Chen, M Wu Frontiers in Genetics 13, 2022 | | 2022 |
| Kinetic characteristics of transcriptional bursting in a complex gene model with cyclic promoter structure X Yang, Z Wang, Y Wu, T Zhou, J Zhang Mathematical Biosciences and Engineering 19 (4), 3313-3336, 2022 | 4 | 2022 |
| Exact distributions for stochastic gene expression models with arbitrary promoter architecture and translational bursting M Chen, S Luo, M Cao, C Guo, T Zhou, J Zhang Physical Review E 105 (1), 014405, 2022 | 10 | 2022 |
| Analysis of non-Markovian effects in generalized birth-death models Z Zhang, M Chen, J Zhang, T Zhou Discrete and Continuous Dynamical Systems-B 26 (7), 3717-3735, 2021 | 2 | 2021 |
| Exploring dissipative sources of non-Markovian biochemical reaction systems X Yang, Y Chen, T Zhou, J Zhang Physical Review E 103 (5), 052411, 2021 | 6 | 2021 |
| Information transmission and noise correlation in continuous and bursty signaling systems X Yang, Y Wu, J Zhang International Journal of Modern Physics B 35 (01), 2150015, 2021 | 1 | 2021 |
