Time profiles of energy balance in dairy cows in association with metabolic status, inflammatory status, and disease J Ma, A Kok, EEA Burgers, RM Bruckmaier, RMA Goselink, JJ Gross, ... Journal of Dairy Science, 2024 | | 2024 |
Proteomics-based identification of biomarkers reflecting endogenous and exogenous exposure to the advanced glycation end product precursor methylglyoxal in SH-SY5Y human … L Zheng, S Boeren, C Liu, W Bakker, H Wang, IMCM Rietjens, E Saccenti International Journal of Biological Macromolecules, 132859, 2024 | | 2024 |
Discrimination of Lipogenic or Glucogenic Diet Effects in Early-Lactation Dairy Cows Using Plasma Metabolite Abundances and Ratios in Combination with Machine Learning X Wang, S Jahagirdar, W Bakker, C Lute, B Kemp, A Knegsel, E Saccenti Metabolites 14 (4), 230, 2024 | | 2024 |
Network analysis of the proteome and peptidome sheds light on human milk as a biological system PM Dekker, S Boeren, E Saccenti, KA Hettinga Scientific Reports 14 (1), 7569, 2024 | 1 | 2024 |
Novel multi-omics deconfounding variational autoencoders can obtain meaningful disease subtyping Z Li, S Katz, E Saccenti, DW Fardo, P Claes, VAP Martins dos Santos, ... bioRxiv, 2024.02. 05.578873, 2024 | 1 | 2024 |
Exploring RNA-seq data normalization methods using principal component analysis and KEGG pathway enrichment HJ van Lingen, MS Diez, E Saccenti Bioinformatics & Systems Biology Conference 2023 (BioSB), 2024 | | 2024 |
A validated model for early prediction of group A streptococcal aetiology and clinical endpoints in necrotising soft tissue infections S Katz, J Suijker, S Skrede, A Meij-de Vries, A Pijpe, A Norrby-Teglund, ... medRxiv, 2024.06. 05.24308478, 2024 | | 2024 |
A gentle introduction to principal component analysis using tea‐pots, dinosaurs, and pizza E Saccenti Teaching Statistics 46 (1), 38-52, 2024 | 1 | 2024 |
Author Correction: Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models E Saccenti, MHWB Hendriks, AK Smilde Scientific Reports 13 (1), 22748, 2023 | 1 | 2023 |
PortPred: exploiting deep learning embeddings of amino acid sequences for the identification of transporter proteins and their substrates M Anteghini, VAPM Santos, E Saccenti Journal of Cellular Biochemistry 124 (11), 1803-1824, 2023 | 2 | 2023 |
Analysis and Interpretation of Metabolite Associations Using Correlations E Saccenti Metabolomics: Recent Advances and Future Applications, 59-92, 2023 | | 2023 |
The human milk proteome and allergy of mother and child: exploring associations with protein abundances and protein network connectivity (vol 13, 977470, 2022) PM Dekker, MB Azad, S Boeren, PJ Mandhane, TJ Moraes, E Simons, ... FRONTIERS IN IMMUNOLOGY 14, 2023 | | 2023 |
Corrigendum: The human milk proteome and allergy of mother and child: exploring associations with protein abundances and protein network connectivity PM Dekker, MB Azad, S Boeren, PJ Mandhane, TJ Moraes, E Simons, ... Frontiers in Immunology 14, 1276180, 2023 | | 2023 |
Energy balance clusters in relation to metabolic and inflammatory status and disease in dairy cows J Ma, A Kok, R Bruckmaier, EEA Burgers, RMA Goselink, J Gross, T Lam, ... EAAP-74th Annual Meeting (2023): Climate Change, Biodiversity and Global …, 2023 | | 2023 |
Classifying lipogenic and glucogenic diets in dairy cows based on metabolomics profiles X Wang, SR Jahagirdar, W Bakker, C Lute, B Kemp, E Saccenti, ... EAAP-74th Annual Meeting (2023): Climate Change, Biodiversity and Global …, 2023 | | 2023 |
mEthAE: an Explainable AutoEncoder for methylation data S Katz, VAP Martins dos Santos, E Saccenti, GV Roshchupkin bioRxiv, 2023.07. 18.549496, 2023 | 1 | 2023 |
Systemic immune activation profiles in streptococcal necrotizing soft tissue infections: A prospective multicenter study E Rath, LMP Medina, S Jahagirdar, KA Mosevoll, JK Damås, MB Madsen, ... Clinical Immunology 249, 109276, 2023 | 7 | 2023 |
Education in systems biology 2022 E Saccenti Frontiers in Systems Biology 3, 1176588, 2023 | | 2023 |
Exploration of Blood Metabolite Signatures of Colorectal Cancer and Polyposis through Integrated Statistical and Network Analysis F Di Cesare, A Vignoli, C Luchinat, L Tenori, E Saccenti Metabolites 13 (2), 296, 2023 | | 2023 |
What can go wrong when observations are not independently and identically distributed: A cautionary note on calculating correlations on combined data sets from different … E Saccenti Frontiers in Systems Biology 3, 1042156, 2023 | 3 | 2023 |