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Dan Kortschak
Dan Kortschak
未知所在单位机构
在 kortschak.io 的电子邮件经过验证
标题
引用次数
年份
Genome stability is in the eye of the beholder: CR1 retrotransposon activity varies significantly across avian diversity
JD Galbraith, RD Kortschak, A Suh, DL Adelson
Genome Biology and Evolution 13 (12), evab259, 2021
112021
Genome stability is in the eye of the beholder: recent retrotransposon activity varies significantly across avian diversity
JD Galbraith, RD Kortschak, A Suh, DL Adelson
bioRxiv, 2021.04. 13.439746, 2021
32021
The tuatara genome reveals ancient features of amniote evolution
NJ Gemmell, K Rutherford, S Prost, M Tollis, D Winter, JR Macey, ...
Nature 584 (7821), 403-409, 2020
1402020
The effect of compound kushen injection on cancer cells: Integrated identification of candidate molecular mechanisms
J Cui, Z Qu, Y Harata-Lee, H Shen, TN Aung, W Wang, RD Kortschak, ...
PloS one 15 (7), e0236395, 2020
222020
The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order
NJ Gemmell, K Rutherford, S Prost, M Tollis, D Winter, JR Macey, ...
bioRxiv, 867069, 2019
72019
A new Strategy for identifying Mechanisms of Drug-drug interaction Using transcriptome Analysis: compound Kushen injection as a proof of principle
H Shen, Z Qu, Y Harata-Lee, J Cui, TN Aung, W Wang, RD Kortschak, ...
Scientific Reports 9 (1), 15889, 2019
62019
Fractional deletion of compound Kushen injection indicates cytokine signaling pathways are critical for its perturbation of the cell cycle
TN Aung, S Nourmohammadi, Z Qu, Y Harata-Lee, J Cui, HY Shen, ...
Scientific Reports 9 (1), 14200, 2019
162019
Understanding the mechanistic contribution of herbal extracts in compound kushen injection with transcriptome analysis
H Shen, Z Qu, Y Harata-Lee, TN Aung, J Cui, W Wang, RD Kortschak, ...
Frontiers in Oncology 9, 632, 2019
242019
A new strategy for identifying mechanisms of drug-drug interaction using transcriptome analysis: Compound Kushen Injection as a proof of principle.
SHY Shen HanYuan, QZP Qu ZhiPeng, Y Harata-Lee, CJ Cui Jian, ...
2019
The root hair defective phenotype of Arabidopsis thaliana Pol IV subunit mutant nrpd1a-3 is associated with a deletion in RHD6
R David, RD Kortschak, I Searle
microPublication Biology 2019, 2019
22019
Horizontal transfer of BovB and L1 retrotransposons in eukaryotes
AM Ivancevic, RD Kortschak, T Bertozzi, DL Adelson
Genome biology 19, 1-13, 2018
1012018
Transposable elements and gene expression during the evolution of amniotes
L Zeng, SM Pederson, RD Kortschak, DL Adelson
Mobile DNA 9, 1-9, 2018
252018
Fractional deletion of Compound Kushen Injection, a natural compound mixture, indicates cytokine signaling pathways are critical for its perturbation of the cell cycle
TN Aung, S Nourmohammadi, Z Qu, Y Harata-Lee, J Cui, HY Shen, ...
bioRxiv, 462135, 2018
22018
Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse
RM Buckley, RD Kortschak, DL Adelson
PLoS Computational Biology 14 (4), e1006091, 2018
22018
Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies
L Zeng, RD Kortschak, JM Raison, T Bertozzi, DL Adelson
PloS one 13 (3), e0193588, 2018
292018
A comprehensive genomic history of extinct and living elephants
E Palkopoulou, M Lipson, S Mallick, S Nielsen, N Rohland, S Baleka, ...
Proceedings of the National Academy of Sciences 115 (11), E2566-E2574, 2018
1732018
arrgh: a Go interface to the OpenCPU R server system.
RD Kortschak
J. Open Source Softw. 3 (21), 517, 2018
12018
bíogo/hts: high throughput sequence handling for the Go
RD Kortschak, BS Pedersen, DL Adelson
2017
bíogo/ncbi: interfaces to NCBI services for the Go language
RD Kortschak, DL Adelson
Journal of Open Source Software 2 (18), 234, 2017
12017
Similar evolutionary trajectories for retrotransposon accumulation in mammals
RM Buckley, RD Kortschak, JM Raison, DL Adelson
Genome biology and evolution 9 (9), 2336-2353, 2017
202017
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