Dynamics of accessible chromatin regions and subgenome dominance in octoploid strawberry C Fang, N Jiang, SJ Teresi, AE Platts, G Agarwal, C Niederhuth, PP Edger, ... Nature Communications 15 (1), 2491, 2024 | 1 | 2024 |
Maternal dominance contributes to subgenome differentiation in allopolyploid fishes MRX Xu, ZY Liao, JR Brock, K Du, GY Li, ZQ Chen, YH Wang, ZN Gao, ... Nature Communications 14 (1), 8357, 2023 | 2 | 2023 |
Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts AE Yocca, A Platts, E Alger, S Teresi, MF Mengist, J Benevenuto, ... Horticulture Research 10 (11), uhad202, 2023 | 4 | 2023 |
Uncovering genetic and metabolite markers associated with resistance against anthracnose fruit rot in northern highbush blueberry MK Jacobs, S Thompson, AE Platts, MJA Body, A Kelsey, A Saad, P Abeli, ... Horticulture Research 10 (10), uhad169, 2023 | | 2023 |
Vaccinium as a comparative system for understanding of complex flavonoid accumulation profiles and regulation in fruit NW Albert, M Iorizzo, MF Mengist, S Montanari, J Zalapa, A Maule, ... Plant Physiology 192 (3), 1696-1710, 2023 | 8 | 2023 |
Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum) MF Mengist, H Bostan, D De Paola, SJ Teresi, AE Platts, G Cremona, X Qi, ... New Phytologist 237 (3), 1024-1039, 2023 | 9 | 2023 |
Nascent transcription and the associated cis-regulatory landscape in rice JY Choi, AE Platts, A Johary, MD Purugganan, Z Joly-Lopez bioRxiv, 2022.07. 06.498888, 2022 | 1 | 2022 |
Genetic architectures of floral pigment and patterning in hybrid monkeyflowers AM Cooley, C Schlutius, M Matthews, X Zheng, D Thomas, PP Edger, ... bioRxiv, 2022.04. 29.490035, 2022 | 1* | 2022 |
Evolutionary systems biology reveals patterns of rice adaptation to drought-prone agro-ecosystems SC Groen, Z Joly-Lopez, AE Platts, M Natividad, Z Fresquez, WM Mauck, ... The Plant Cell, 2021 | 24 | 2021 |
Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) Q Qiao, PP Edger, L Xue, L Qiong, J Lu, Y Zhang, Q Cao, AE Yocca, ... Proceedings of the National Academy of Sciences 118 (45), e2105431118, 2021 | 56 | 2021 |
Blueprint for Phasing and Assembling the Genomes of Heterozygous Polyploids: Application to the Octoploid Genome of Strawberry MA Hardigan, MJ Feldmann, DD Pincot, RA Famula, MV Vachev, ... bioRxiv, 2021 | 30 | 2021 |
Adaptive and maladaptive expression plasticity underlying herbicide resistance in an agricultural weed EB Josephs, ML Van Etten, A Harkess, AE Platts, RS Baucom Evolution letters 5 (4), 432-440, 2021 | 17 | 2021 |
Chromosome-Scale Genome for a Red-Fruited, Perpetual Flowering and Runnerless Woodland Strawberry (Fragaria vesca) EI Alger, AE Platts, SK Deb, X Luo, S Ou, Y Cao, KE Hummer, Z Xiong, ... Frontiers in Genetics 12, 671371, 2021 | 10 | 2021 |
The strength and pattern of natural selection on gene expression in rice SC Groen, I Ćalić, Z Joly-Lopez, AE Platts, JY Choi, M Natividad, K Dorph, ... Nature 578 (7796), 572-576, 2020 | 98 | 2020 |
In the Presence of Population Structure: from Genomics to Candidate Genes Underlying Local Adaptation N Price, L Lopez, AE Platts, JR Lasky Ecology & Evolution 10, 1889-1904, 2020 | 19 | 2020 |
An inferred fitness consequence map of the rice genome Z Joly-Lopez, AE Platts, B Gulko, JY Choi, SC Groen, X Zhong, A Siepel, ... Nature plants 6 (2), 119-130, 2020 | 22 | 2020 |
Genome Improvement and Genetic Map Construction for Aethionema arabicum, the First Divergent Branch in the Brassicaceae Family TP Nguyen, C Mühlich, S Mohammadin, E van den Bergh, AE Platts, ... G3: Genes, Genomes, Genetics 9 (11), 3521-3530, 2019 | 13 | 2019 |
De novo Assembly of the Pokeweed Genome Provides Insight Into Pokeweed Antiviral Protein (PAP) Gene Expression KCM Neller, CA Diaz, AE Platts, KA Hudak Frontiers in Plant Science 10, 1002, 2019 | 13 | 2019 |
Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower PP Edger, R Smith, MR McKain, AM Cooley, M Vallejo-Marin, Y Yuan, ... The Plant Cell 29 (9), 2150-2167, 2017 | 231 | 2017 |
The rice paradox: multiple origins but single domestication in Asian rice JY Choi, AE Platts, DQ Fuller, YI Hsing, RA Wing, MD Purugganan Molecular biology and evolution 34 (4), 969-979, 2017 | 246 | 2017 |