Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands KE Medvedev, J Zhang, RD Schaeffer, LN Kinch, Q Cong, NV Grishin Scientific reports 14 (1), 12260, 2024 | | 2024 |
Computational analysis of propeptide‐containing proteins and prediction of their post‐cleavage conformation changes J Pei, LN Kinch, Q Cong Proteins: Structure, Function, and Bioinformatics, 2024 | | 2024 |
Tu1895 COMPARATIVE GENOMICS REVEALS GENTAMICIN RESISTANCE AMONG ADHERENT INVASIVE ESCHERICHIA COLI ASSOCIATED WITH CROHN'S DISEASE JY Kim, LN Kinch, J Zhang, S Field, J Shen, JMA Klapproth, K Forsberg, ... Gastroenterology 166 (5), S-1458, 2024 | | 2024 |
What one genus of showy moths can say about migration, adaptation, and wing pattern J Zhang, Q Cong, J Shen, L Song, W Hallwachs, DH Janzen, A Sourakov, ... Proceedings of the National Academy of Sciences 121 (17), e2319726121, 2024 | | 2024 |
COA8 is a COX10-binding protein involved in the early biogenesis of cytochrome c oxidase M Brischigliaro, K Cunatova, A Cabrera-Orefice, J Pei, C Franchin, ... bioRxiv, 2024.04. 02.587738, 2024 | | 2024 |
Revolutionizing protein–protein interaction prediction with deep learning J Zhang, J Durham, Q Cong Current Opinion in Structural Biology 85, 102775, 2024 | 1 | 2024 |
ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2 RD Schaeffer, J Zhang, KE Medvedev, LN Kinch, Q Cong, NV Grishin PLOS Computational Biology 20 (2), e1011586, 2024 | 5 | 2024 |
Suggested searches H Doré, AR Eisenberg, EN Junkins, GE Leventhal, A Ganesh, OX Cordero, ... Perspective, 2024 | 1 | 2024 |
Genomics-based taxonomic rearrangement of Achlyodini and Carcharodini (Lepidoptera: Hesperiidae: Pyrginae) J Zhang, Q Cong, J Shen, L Song, NV Grishin Insecta Mundi, 2024 | 2 | 2024 |
Essential and virulence-related protein interactions of pathogens revealed through deep learning IR Humphreys, J Zhang, M Baek, Y Wang, A Krishnakumar, J Pei, ... bioRxiv, 2024.04. 12.589144, 2024 | | 2024 |
COA8 is a COX10-binding protein involved in the early biogenesis of cytochrome c oxidase E Fernandez-Vizarra, M Brischigliaro, K Cunatova, A Cabrera-Orefice, ... bioRxiv, 2024 | | 2024 |
Critical assessment of genome interpretation consortium. CAGI, the critical assessment of genome interpretation, establishes progress and pprospects for computational genetic … S Jain, C Bakolitsa, EB Steven, P Radivojac, J Moult, S Repo, AH Roger, ... Genome Biology 22 (22; 25 (1): 53.), 1-46, 2024 | | 2024 |
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods N Null, S Jain, C Bakolitsa, SE Brenner, P Radivojac, J Moult, S Repo, ... Genome Biology 25 (1), 1-46, 2024 | 3 | 2024 |
Taxonomic advances driven by the genomic analysis of butterflies J Zhang, Q Cong, J Shen, L Song, NV Grishin | 1 | 2024 |
Orthogonalized human protease control of secreted signals CA Aldrete, AE Vlahos, J Pei, Q Cong, XJ Gao bioRxiv, 2024.01. 18.576308, 2024 | | 2024 |
Computational analysis of protein–protein interactions of cancer drivers in renal cell carcinoma J Pei, J Zhang, Q Cong FEBS Open Bio 14 (1), 112-126, 2024 | 1 | 2024 |
Insights into virulence: structure classification of the Vibrio parahaemolyticus RIMD mobilome LN Kinch, RD Schaeffer, J Zhang, Q Cong, K Orth, N Grishin MSystems 8 (6), e00796-23, 2023 | | 2023 |
Phylogeography of Two Enigmatic Sulphur Butterflies, Colias mongola Alphéraky, 1897 and Colias tamerlana Staudinger, 1897 (Lepidoptera, Pieridae), with Relations to … NA Shapoval, AV Kir’yanov, AV Krupitsky, RV Yakovlev, AE Romanovich, ... Insects 14 (12), 943, 2023 | | 2023 |
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle Y Wang, LA Gallagher, PA Andrade, A Liu, IR Humphreys, S Turkarslan, ... Cell 186 (22), 4803-4817. e13, 2023 | 10 | 2023 |
Computational analysis of regulatory regions in human protein kinases J Pei, Q Cong Protein Science 32 (10), e4764, 2023 | 2 | 2023 |