| Root branching under high salinity requires auxin-independent modulation of LATERAL ORGAN BOUNDARY DOMAIN 16 function Y Zhang, Y Li, T de Zeeuw, K Duijts, D Kawa, J Lamers, KS Munzert, H Li, ... The Plant Cell 36 (4), 899-918, 2024 | 2 | 2024 |
| A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1 SW van Es, A Muñoz‐Gasca, FJ Romero‐Campero, E González‐Grandío, ... New Phytologist 241 (3), 1193-1209, 2024 | 11 | 2024 |
| Protein interaction mapping reveals widespread targeting of development‐related host transcription factors by phytoplasma effectors M Correa Marrero, S Capdevielle, W Huang, AM Al‐Subhi, M Busscher, ... The Plant Journal 117 (4), 1281-1297, 2024 | 5 | 2024 |
| Terpenoid Biosynthetic Pathway in Ferula persica Using Transcriptome Analysis and Metabolome Data J Nasiri, A Soorni, ADJ van Dijk, MR Naghavi Journal of Agricultural Science and Technology (JAST) 26 (1), 177-192, 2024 | | 2024 |
| What makes the effect of protein mutations difficult to predict? H Redestig, F van der Flier, D Estell, S Pricelius, L Dankmeyer, ... | | 2023 |
| Interploidy Introgression Shaped Adaptation during the Origin and Domestication History of Brassica napus T Wang, ADJ van Dijk, J Bucher, J Liang, J Wu, G Bonnema, X Wang Molecular Biology and Evolution 40 (9), msad199, 2023 | 4 | 2023 |
| Gene Expression, Transcription Factor Binding and Histone Modification Predict Leaf Adaxial-Abaxial Polarity Related Genes in Arabidopsis Thaliana W Sun, G Bonnema, X Wang, ADJ van Dijk Transcription Factor Binding and Histone Modification Predict Leaf Adaxial …, 2023 | | 2023 |
| Transcriptional Feedback in Plant Growth and Defense by PIFs, BZR1, HY5, and MYC Transcription Factors S Koene, U Shapulatov, ADJ van Dijk, AR van der Krol Plant Molecular Biology Reporter 41 (1), 59-80, 2023 | | 2023 |
| Maize resistance to witchweed through changes in strigolactone biosynthesis C Li, L Dong, J Durairaj, JC Guan, M Yoshimura, P Quinodoz, R Horber, ... Science 379 (6627), 94-99, 2023 | 25 | 2023 |
| What makes the effect of protein mutations difficult to predict? FJ van der Flier, D Estell, S Pricelius, L Dankmeyer, S van Stigt Thans, ... bioRxiv, 2023.09. 25.559319, 2023 | 2 | 2023 |
| Beyond sequence: Structure-based machine learning J Durairaj, D de Ridder, ADJ van Dijk Computational and Structural Biotechnology Journal 21, 630-643, 2023 | 9 | 2023 |
| Individual lipid transfer proteins from Tanacetum parthenium show different specificity for extracellular accumulation of sesquiterpenes AB Kashkooli, ADJ Van Dijk, H Bouwmeester, A Van Der Krol Plant Molecular Biology 111 (1), 153-166, 2023 | | 2023 |
| Detoxification of monoterpenes by a family of plant glycosyltransferases R Karlova, J Busscher, FM Schempp, M Buchhaupt, ADJ van Dijk, ... Phytochemistry 203, 113371, 2022 | 2 | 2022 |
| The tomato cytochrome P450 CYP712G1 catalyses the double oxidation of orobanchol en route to the rhizosphere signalling strigolactone, solanacol Y Wang, J Durairaj, HG Suárez Duran, R van Velzen, K Flokova, CY Liao, ... New Phytologist 235 (5), 1884-1899, 2022 | 21 | 2022 |
| Pollen sequencing reveals barriers and aberrant patterns of recombination in interspecific tomato hybrids RR Fuentes, R Nieuwenhuis, J Chouaref, T Hesselink, W van Dooijeweert, ... bioRxiv, 2022.07. 02.498571, 2022 | 2 | 2022 |
| Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics ADJ van Dijk, SH Shiu, D de Ridder Frontiers in Artificial Intelligence 5, 959470, 2022 | 1 | 2022 |
| Genomic prediction in plants: opportunities for ensemble machine learning based approaches M Farooq, ADJ van Dijk, H Nijveen, S Mansoor, D de Ridder F1000Research 11, 2022 | 3 | 2022 |
| Domestication shapes recombination patterns in tomato RR Fuentes, D de Ridder, ADJ van Dijk, SA Peters Molecular biology and evolution 39 (1), msab287, 2022 | 23 | 2022 |
| Fast and adaptive protein structure representations for machine learning J Durairaj, M Akdel, D Ridder, ADJ Dijk bioRxiv, 2021.04. 07.438777, 2021 | 3 | 2021 |
| Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases J Durairaj, E Melillo, HJ Bouwmeester, J Beekwilder, D de Ridder, ... PLoS Computational Biology 17 (3), e1008197, 2021 | 13 | 2021 |
