| Evaluating GPT and BERT models for Protein-Protein interaction identification in biomedical text H Rehana, NB Çam, M Basmaci, J Zheng, C Jemiyo, Y He, A Özgür, J Hur Bioinformatics Advances, vbae133, 2024 | | 2024 |
| Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models J Li, Y Li, Y Pan, J Guo, Z Sun, F Li, Y He, C Tao Journal of Biomedical Semantics 15 (1), 14, 2024 | 4 | 2024 |
| Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis J Zheng, X Li, AM Masci, H Kahn, A Huffman, E Asfaw, Y Pan, J Guo, V He, ... Journal of Biomedical Semantics 15 (1), 12, 2024 | | 2024 |
| Grounding Realizable Entities M Rabenberg, C Benson, F Donato, Y He, A Huffman, S Babcock, ... arXiv preprint arXiv:2405.00197, 2024 | | 2024 |
| Credentials in the Occupation Ontology J Beverley, R McGill, S Smith, J Zheng, G De Colle, F Wilson, M Diller, ... arXiv preprint arXiv:2405.00186, 2024 | | 2024 |
| Ontological representation, modeling, and analysis of parasite vaccines A Huffman, X Zhang, M Lanka, J Zheng, AM Masci, Y He Journal of Biomedical Semantics 15 (1), 4, 2024 | | 2024 |
| Ontology-based modeling, integration, and analysis of heterogeneous clinical, pathological, and molecular kidney data for precision medicine YO He, L Barisoni, AZ Rosenberg, PN Robinson, AD Diehl, Y Chen, ... bioRxiv, 2024.04. 01.587658, 2024 | 1 | 2024 |
| CanVaxKB: a web-based cancer vaccine knowledgebase E Asfaw, AY Lin, A Huffman, S Li, M George, C Darancou, M Kalter, ... NAR cancer 6 (1), zcad060, 2024 | | 2024 |
| Ontology-based taxonomical analysis of experimentally verified natural and laboratory human coronavirus hosts and its implication for COVID-19 virus origination and transmission Y Wang, M Ye, F Zhang, ZT Freeman, H Yu, X Ye, Y He Plos one 19 (1), e0295541, 2024 | 2 | 2024 |
| Impact of heat on emergency hospital admissions related to kidney diseases in Texas: Uncovering racial disparities C Guo, E Ge, M Yu, C Li, X Lao, S Li, J Glaser, Y He, M Almeida-Silva, ... Science of The Total Environment 909, 168377, 2024 | 1 | 2024 |
| Coordinating virus research: The Virus Infectious Disease Ontology J Beverley, S Babcock, G Carvalho, LG Cowell, S Duesing, Y He, ... Plos one 19 (1), e0285093, 2024 | 2 | 2024 |
| The Human Phenotype Ontology in 2024: phenotypes around the world. F Castellanos, J Caufield, L Chan, C Chute, J Cruz-Rojo, N Dahan-Oliel, ... Nucleic Acids Research 52 (D1), 2024 | 2 | 2024 |
| Enhancing Vaxign-DL for Vaccine Candidate Prediction with added ESM-Generated Features Y Chen, Y Zhang, Y He bioRxiv, 2024.09. 04.611295, 2024 | | 2024 |
| Nested Named Entity Recognition using Multilayer BERT-based Model H Rehana, B Bansal, NB Çam, J Zheng, Y He, A Özgür, J Hur CLEF Working Notes, 2024 | 1 | 2024 |
| Leveraging Large Language Models for Extracting Protein-Protein Interactions from Biomedical Corpora H Rehana, NB Çam, M Basmaci, J Zheng, C Jemiyo, Y He, A Özgür, J Hur | | 2024 |
| Bacterial whole-genome determination and applications Y He, E Ong, A Huffman Molecular medical microbiology, 511-525, 2024 | 16 | 2024 |
| Vaxign-DL: A Deep Learning-based Method for Vaccine Design and its Evaluation Y Zhang, A Huffman, J Johnson, Y He Biorxiv, 2023 | 1 | 2023 |
| An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C) S Liu, A Wen, L Wang, H He, S Fu, R Miller, A Williams, D Harris, ... Journal of the American Medical Informatics Association 30 (12), 2036-2040, 2023 | 7 | 2023 |
| Big knowledge visualization of the COVID-19 CIDO ontology evolution L Zheng, Y Perl, Y He BMC Medical Informatics and Decision Making 23 (Suppl 1), 88, 2023 | 2 | 2023 |
| Killing tumor-associated bacteria with a liposomal antibiotic generates neoantigens that induce anti-tumor immune responses M Wang, B Rousseau, K Qiu, G Huang, Y Zhang, H Su, ... Nature Biotechnology, 1-12, 2023 | 42 | 2023 |
Jie ZhengUniversity of Michigan在 med.umich.edu 的电子邮件经过验证
