| Drug resistance and epidemiological success of modern Mycobacterium tuberculosis lineages in western India A Dixit, Y Ektefaie, A Kagal, L Freschi, R Karyakarte, R Lokhande, ... The Journal of Infectious Diseases, jiae240, 2024 | | 2024 |
| Estimation of country-specific tuberculosis resistance antibiograms using pathogen genomics and machine learning A Dixit, L Freschi, R Vargas, MI Gröschel, M Nakhoul, S Tahseen, ... BMJ Global Health 9 (3), e013532, 2024 | 1 | 2024 |
| Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex R Vargas Jr, MJ Luna, L Freschi, M Marin, R Froom, KC Murphy, ... Proceedings of the National Academy of Sciences 120 (28), e2301394120, 2023 | 7 | 2023 |
| Analysis of Genome-Wide Mutational Dependence in Naturally Evolving Mycobacterium tuberculosis Populations AG Green, R Vargas Jr, MG Marin, L Freschi, J Xie, MR Farhat Molecular Biology and Evolution 40 (6), msad131, 2023 | 3 | 2023 |
| Phenotypic and genomic analysis of a large-scale Corynebacterium diphtheriae outbreak among migrant populations in Europe A Hoefer, HMB Seth-Smith, F Palma, S Schindler, L Freschi, A Dangel, ... medRxiv, 2023.11. 10.23297228, 2023 | 1 | 2023 |
| A convolutional neural network highlights mutations relevant to antimicrobial resistance in Mycobacterium tuberculosis AG Green, CH Yoon, ML Chen, Y Ektefaie, M Fina, L Freschi, MI Gröschel, ... Nature communications 13 (1), 3817, 2022 | 28 | 2022 |
| The discovery of genome-wide mutational dependence in naturally evolving populations AG Green, R Vargas Jr, MG Marin, L Freschi, J Xie, MR Farhat bioRxiv, 2022.06. 24.497504, 2022 | 1 | 2022 |
| Draft Genome Sequences of Two Clostridium botulinum Group II Strains Carrying Phage-Like Plasmids B Cadieux, OU Lawal, JG Emond-Rheault, J Jeukens, L Freschi, ... Microbiology Resource Announcements 11 (6), e00091-22, 2022 | | 2022 |
| Modern lineages of Mycobacterium tuberculosis were recently introduced in western India and demonstrate increased transmissibility A Dixit, A Kagal, Y Ektefaie, L Freschi, R Karyakarte, R Lokhande, ... medRxiv, 2022.01. 04.22268645, 2022 | 1 | 2022 |
| GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning MI Gröschel, M Owens, L Freschi, R Vargas, MG Marin, J Phelan, Z Iqbal, ... Genome medicine 13, 1-14, 2021 | 34 | 2021 |
| 1397. Modern Lineages of Mycobacterium tuberculosis Were Recently Introduced in Western India and Demonstrate Increased Transmissibility A Dixit, A Kagal, Y Ektefaie, L Freschi, R Lokhande, M Groeschel, ... Open Forum Infectious Diseases 8 (Supplement_1), S783-S784, 2021 | | 2021 |
| Population structure, biogeography and transmissibility of Mycobacterium tuberculosis L Freschi, R Vargas Jr, A Husain, SMM Kamal, A Skrahina, S Tahseen, ... Nature communications 12 (1), 6099, 2021 | 85 | 2021 |
| Role of epistasis in amikacin, kanamycin, bedaquiline, and clofazimine resistance in Mycobacterium tuberculosis complex R Vargas Jr, L Freschi, A Spitaleri, S Tahseen, I Barilar, S Niemann, ... Antimicrobial Agents and Chemotherapy 65 (11), 10.1128/aac. 01164-21, 2021 | 51 | 2021 |
| Estimation of country-specific tuberculosis antibiograms using genomic data A Dixit, L Freschi, R Vargas Jr, MI Groeschel, S Tahseen, SMM Alam, ... medRxiv, 2021.09. 23.21263991, 2021 | 2 | 2021 |
| Transmission, adaptation and geographical spread of the Pseudomonas aeruginosa Liverpool epidemic strain MP Moore, IL Lamont, D Williams, S Paterson, I Kukavica-Ibrulj, ... Microbial genomics 7 (3), 000511, 2021 | 22 | 2021 |
| Globally diverse Mycobacterium tuberculosis resistance acquisition: a retrospective geographical and temporal analysis of whole genome sequences Y Ektefaie, A Dixit, L Freschi, MR Farhat The Lancet Microbe 2 (3), e96-e104, 2021 | 39 | 2021 |
| In-host population dynamics of Mycobacterium tuberculosis complex during active disease R Vargas, L Freschi, M Marin, LE Epperson, M Smith, I Oussenko, ... Elife 10, e61805, 2021 | 36 | 2021 |
| 1653. Estimation of country-specific tuberculosis antibiograms using a wide and deep neural net on a large genomic dataset A Dixit, L Freschi, R Vargas Jr, M Groeschel, M Chen, S Tahseen, ... Open Forum Infectious Diseases 7 (Suppl 1), S815, 2020 | | 2020 |
| Contributions from the 2019 literature on bioinformatics and translational informatics M Smaïl-Tabbone, B Rance Yearbook of Medical Informatics 29 (01), 188-192, 2020 | 4 | 2020 |
| The Salmonella enterica Plasmidome as a Reservoir of Antibiotic Resistance JG Emond-Rheault, J Hamel, J Jeukens, L Freschi, I Kukavica-Ibrulj, ... Microorganisms 8 (7), 1016, 2020 | 27 | 2020 |
Roger Levesqueprofessor, Université Laval在 ibis.ulaval.ca 的电子邮件经过验证
